Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq179 143 8e-29 >seq179 Length=41754 Score = 143 bits (158), Expect = 8e-29 Identities = 365/544 (67%), Gaps = 20/544 (4%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||| || || || ||| | | || ||||| || ||| ||||| || || || || || Sbjct 20621 CGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGG 20562 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 ||||| ||| ||| ||||| ||||||||||||||||||||||||||||| || || Sbjct 20561 AGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC-GTGTTCG 20503 Query 255091 -GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACA 255149 ||| | |||| | | || ||||| |||| || ||| |||||| ||| | Sbjct 20502 AGTTCCTGGAGCTGCGCAAGAACCACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCT 20443 Query 255150 CCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAA-CGAGACGAGACCTGGAGC 255208 |||| | ||| | ||||||||| ||| || |||||| ||| ||| | |||||| Sbjct 20442 ACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCGA-ACGGCAAGTGGAGC 20384 Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268 || | || ||||| | ||||| || ||| | ||||| |||||||| || | Sbjct 20383 CTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACT 20324 Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCG---TACGCCAAGTGCCCGCGAAGAA 255324 ||||| | |||||||| | || || | || ||| | ||||| || | Sbjct 20323 CTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGACGATCAATGCCC----AGCA 20268 Query 255325 GATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAA 255384 | | ||| | | || || | |||| | || || || |||||||| | || |||| Sbjct 20267 GCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGTGTGCCGTTCATGCTGTACAA 20208 Query 255385 AGAC-CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCG---A 255440 ||| | || |||| ||||||||| | ||| ||| ||||| | ||||| | Sbjct 20207 GGACGCGGCCAACCGCA-AGTCGAACCAGCAGAACCTCGGCACGAT---CCGCTCGAGCA 20152 Query 255441 ACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGG 255500 || ||||| |||||||| | | ||||||| | | |||||||| || |||||| ||| Sbjct 20151 ACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAGGTGGCGGTGTGCAACCTGG 20092 Query 255501 CGTC 255504 |||| Sbjct 20091 CGTC 20088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588238276634890