Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq179 168 8e-37 seq3552 116 5e-21 seq340 91.5 2e-13 >seq179 Length=41754 Score = 168 bits (186), Expect = 8e-37 Identities = 735/1144 (64%), Gaps = 43/1144 (4%) Strand=Plus/Plus Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 |||||| ||||||||||||| || || || | ||||| || | ||| ||||| || ||| Sbjct 19896 ATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGAC 19955 Query 111104 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 || ||||| ||| ||||| || | || ||||||||| ||| | || ||| Sbjct 19956 TTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTC 20015 Query 111164 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 || | ||| || | || | || || | || | || | || | || | ||| Sbjct 20016 ACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACA 20069 Query 111224 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 |||| || ||||| | || |||| ||||| || ||| |||||| |||||| Sbjct 20070 AACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTAC 20129 Query 111284 TCTAAAATTTCTGTACATAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTA 111340 || | ||| || || |||||| ||| ||||| || | |||| ||||| Sbjct 20130 TCCATAATCTCGCAGCACAAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTC 20186 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||| |||| ||| |||||||| |||||| | ||| |||||||| |||| | Sbjct 20187 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACACCCGTCTCAATCTGCGCG 20246 Query 111401 TTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCC 111454 | || || || ||| | || ||||| || || ||| || || || ||| Sbjct 20247 TCCAGGATGGCGAACCACA-----GCTGCTGGG-CATTGATCGTCTTGCGCGCGCGCCCC 20300 Query 111455 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACC 111513 ||| ||||||||| ||| || | || ||||| || ||| | || ||| |||| || Sbjct 20301 TCCTTCTCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCC 20359 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || |||| | || |||||||| ||| | || | || || ||||||||||| Sbjct 20360 GGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAA 20419 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTT 111632 || || || | |||||| | | ||||| || | | | | || | |||| || | Sbjct 20420 CAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGT 20478 Query 111633 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 111692 |||| || | ||| |||||||| | | || |||||||| ||||| || |||| | Sbjct 20479 GGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGG 20538 Query 111693 CGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 111749 ||| || || || || | || | || | |||||||| || ||| | || || | Sbjct 20539 CGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGA 20598 Query 111750 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTA 111808 | | ||||| || || || || | ||| || || || || || || || | || Sbjct 20599 CCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTC 20657 Query 111809 TTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCA 111868 |||| | | | || ||| || |||||||| || |||||||| ||||| ||| Sbjct 20658 GTGGCGCGGATGTTGTGCATGCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCG 20717 Query 111869 CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAG 111928 |||| | | || || | || || || | || ||||| |||| |||| | ||||| Sbjct 20718 CACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAA 20777 Query 111929 CAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---A 111985 || |||| |||||| | || || || || || ||||| || || || ||||| | Sbjct 20778 CACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTA 20837 Query 111986 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 112045 | |||||| || ||||| || || || | || | | | ||||||| | | Sbjct 20838 AAGAACAT---CTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTG 20894 Query 112046 TGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCG 112105 || || || | || || ||||||| ||| | ||| ||| |||| || | || | Sbjct 20895 TGAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTACCGTTC 20954 Query 112106 AGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGT 112163 | || ||||| |||| |||||| || |||| || ||||| | | ||| ||| Sbjct 20955 A--CGCGGAAGAGGTAGCCTCGCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGT 21012 Query 112164 CCCG 112167 |||| Sbjct 21013 CCCG 21016 >seq3552 Length=1496 Score = 116 bits (128), Expect = 5e-21 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 1255 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1196 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| || || |||||| |||| | || || |||||| | | | || || | Sbjct 1195 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGC 1138 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | ||| |||| ||||||| | |||| | |||||||||| ||||| || | Sbjct 1137 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 1078 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | ||| | |||| | | ||||||| | || || || |||||| |||| Sbjct 1077 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1018 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 122663 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 1017 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 963 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| | ||||| || ||| || || || || ||||||| ||||| ||||| Sbjct 962 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 903 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || | |||||| || || |||||||| || ||||| Sbjct 902 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 843 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATT 122842 ||| || ||||| | || || || | | |||| ||| || | ||| |||| | Sbjct 842 CACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACT 784 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 783 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 735 >seq340 Length=28314 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 182660 AAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACC 182719 |||||| ||||| | || || || || ||| | ||| |||||||| || |||||||| Sbjct 15339 AAGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACC 15280 Query 182720 GTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACC 182779 ||| |||||||| ||||| || | ||||| || || || || | || || |||||||| Sbjct 15279 GTACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACC 15220 Query 182780 CTCCGTGACAATGAGAGTACACT 182802 ||| || | ||| || | |||| Sbjct 15219 CTCAGTCAAAATCAGCGAGCACT 15197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627994302379200