Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq179 179 4e-40 seq3552 109 6e-19 >seq179 Length=41754 Score = 179 bits (198), Expect = 4e-40 Identities = 1102/1748 (63%), Gaps = 62/1748 (4%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||||||||| | |||||||| | ||||||| | | | Sbjct 20933 CCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATTCACAAGCAAGACATCCAGGCGGC 20874 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337 || | || || || ||||| || |||||| || ||||| || || || || Sbjct 20873 ACTGCACACGTATGAGCTCATGTCACA---GATGTTCTTTACGCACGCGACGCCCACGCT 20817 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 ||| || || || || || | || || |||| || ||||| | |||| |||| Sbjct 20816 CTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGTTTCCTGCTGGCCATGCAGGA 20757 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||||| || | || || || | || || | | |||| ||| ||||| |||||||| Sbjct 20756 CGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGC 20697 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || ||| || | | | |||| || | || || || || | Sbjct 20696 CGGAGGTATTGGCATTAGCATGCACAACATCCGCGCCACGAACAGCT-ACATCCGCGGCA 20638 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || ||| | || || || || ||||| | || || || | ||| || |||| Sbjct 20637 CGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCT 20578 Query 104577 ATGTAAATCA---AGCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 |||| | || || || || || || || |||| |||| || ||||| |||| Sbjct 20577 ATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGC 20518 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| || | | |||||||| ||| |||| ||||| || |||| | || | | Sbjct 20517 ACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAACGA-GCTGCACCGC 20459 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| ||||||| |||||| ||| | || ||||| ||||||||| | || || | | Sbjct 20458 GCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCG 20399 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | ||||| ||| || || || || | |||| || || |||| ||| ||| | ||| Sbjct 20398 AACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTGCTG-GGG 20340 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 || ||||| || | || ||| ||||||||| | || || || ||| |||| | Sbjct 20339 CGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGACGAT 20280 Query 104872 -----GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 ||||| || ||||| || || || | | || | ||||| ||| Sbjct 20279 CAATGCCCAGCAGC-----TGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGTGTG 20225 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||||| |||| ||| || || |||| | || | Sbjct 20224 CCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACG 20165 Query 104987 AT---CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 || | ||| ||| | || || || |||| | || |||||| | Sbjct 20164 ATCCGCTCGAG---CAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAGGTG 20108 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 || ||||| ||||| || || | || |||||||||| |||||| || || Sbjct 20107 GCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGA-----GGATGGAG-TG 20054 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 || | || | || || |||| || || || || ||| ||| | |||| || Sbjct 20053 TTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGAACAAGGTC 19994 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||||| || | |||||||| ||| || || || || || ||| | ||||| || Sbjct 19993 ATTGACGTCAACTACTACCCCGTGGAGGAGGCGCGCAAGTCCAACATGCGCCACCGCCCG 19934 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 105283 ||||| | || || |||||||||||||||| ||| || || | | || || || Sbjct 19933 GTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTATCCTCATGAACTATGCGTTCGAG 19874 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 | |||| ||| |||| | ||| || ||||| || || |||| || | Sbjct 19873 AGCCCGCAAGCCCGTGAACTCAACATGAACATCTTCGAGACGATCTACTACGCTTCTATG 19814 Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 ||| | ||| | || ||| || || || || || || |||| || || Sbjct 19813 GAGACCTCGATGGAGATCGCCAAGGAGCTGGGCCCGTACGAGACGTTCCAGGGATCGCCT 19754 Query 105404 GCTTCA-CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC----- 105455 || || |||||| ||| || || || |||||| || | ||| | |||| Sbjct 19753 GC--CAGCAAGGGTATCTTCCAGTTCGACATGTGG---GGCGTCACCCCGTCTTCGGGCT 19699 Query 105456 ACTACGACTGGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 | || |||| || |||||| ||||| |||| || | || | || ||| | Sbjct 19698 TGTGGGATTGGGCTGCGCTCAAGGAGAACGTGATCA---AGCACGGCATCCGCAACTCGC 19642 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 ||||| ||||||| ||||| || || || || || || || ||||| || ||||| | | Sbjct 19641 TCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGATTTTGGGCAACAATGAGTCCA 19582 Query 105573 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 105632 | || || |||||| ||||||| || | | || || || ||||| ||| | Sbjct 19581 TCGAGCCGTACACGTCGAACATGTACAACCGCCGCGTGCTGGCTGGTGAGTTCACGATCG 19522 Query 105633 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692 | |||||| | ||| || | || || | ||| | || ||||| | || || Sbjct 19521 TGAACAAGTACCTCATGAAGGAGCTGATCGAGCTGGGCATCTGGACGCCTGAGGTGCGCA 19462 Query 105693 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGA---TATTCCAAATGAAA 105749 | | || || | ||||| ||| | || || ||| | ||||| | | Sbjct 19461 ACCAGATTCTGGCTGACGGTGGCTCCGTGCAGAA---GGTGAAATCCATTCCGGACCAGG 19405 Query 105750 TTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCG 105809 | ||| || |||| || || ||||| |||||| ||||| || | ||| || | | Sbjct 19404 TCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCCGTGTTGGACCTGTCGG 19345 Query 105810 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAA 105869 | || ||||| || |||| || || || |||| | ||| | || | Sbjct 19344 CGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCCGACCCGA 19285 Query 105870 CGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGA 105929 |||| |||||| | || |||||| | ||| ||||||||||| ||||| ||||| | Sbjct 19284 CGATTAGCAAGCTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCA 19225 Query 105930 TGTATTAC 105937 |||| ||| Sbjct 19224 TGTACTAC 19217 >seq3552 Length=1496 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 840 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 899 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 900 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583225789770480