Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq179 343 2e-89 seq42 131 2e-25 seq3552 127 2e-24 seq847 127 2e-24 seq340 125 8e-24 seq134 111 2e-19 >seq179 Length=41754 Score = 343 bits (380), Expect = 2e-89 Identities = 1136/1743 (65%), Gaps = 44/1743 (3%) Strand=Plus/Plus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || ||||||||||||||||||| |||||||||||| |||| | |||||| Sbjct 19205 GCGTCCGCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT 19264 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || | ||||| || || |||| | ||| |||||||| ||||| ||| || Sbjct 19265 GGACGTCAGCTTGCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCA 19324 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 ||| | || ||||| || |||| || || | | | ||| || || ||||| || Sbjct 19325 AATGTAGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACAC 19384 Query 80214 TGTACGATACACCTTACGAAGCTCCTCTGGAATG---TCCAGATTTTGCACACTGCCACC 80270 || ||| || | || || |||||| | || || ||||| |||||| Sbjct 19385 CGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACC 19444 Query 80271 GTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTT 80330 ||| | ||| || || || |||| |||||||| || |||| | ||| || || Sbjct 19445 GTCAGCCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTT 19504 Query 80331 CACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTT 80390 || |||| |||||| | || ||||| || || || ||| || |||| ||| Sbjct 19505 CATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTT 19564 Query 80391 TGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGG 80450 | ||||| ||||| | | ||| ||||| || | ||||||||||| ||| || || Sbjct 19565 CGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGG 19624 Query 80451 CATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC-----GCGC 80505 |||||| | || | || || || || | ||||||||| | | | ||| |||| Sbjct 19625 CATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGC 19684 Query 80506 AAATCTGACCAAAAATCAACCCCA-ACGCTGTGAC--CCCACATGTCGTGCTGCAAGATG 80562 | | || | || | || | ||| ||||| ||||||||||| ||| ||||| Sbjct 19685 AGCCCAATCCCACAAGC--CCGAAGACGGGGTGACGCCCCACATGTCGAACTGGAAGATA 19742 Query 80563 CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCA 80622 |||| || || || ||| ||||||||||||||||||| | |||||| | ||| Sbjct 19743 CCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCC 19802 Query 80623 CACGA---CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCG 80679 ||| ||||||| | |||| || || ||| |||| | | |||| | | Sbjct 19803 ATCGAGGTCTCCATA---GAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCA 19859 Query 80680 CGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGA 80739 || || || ||| ||||||| || ||| | || || | || || || ||||| Sbjct 19860 CGGGCTTGCGGGCTCTCGAACGCATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGG 19919 Query 80740 ACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTA 80798 ||||| || | | ||||||||||||| |||| || | || | |||||| | ||||| Sbjct 19920 ACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGC-GCCTCCTCCACGGGGTA 19978 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAG 80858 |||| || ||||| ||||| ||| || || || ||| || || || | || Sbjct 19979 GTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAG 20038 Query 80859 TTTCTGAAAGTCGAATTGGTTCC--CCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGA 80916 ||||| ||| ||| ||| ||| |||||| || ||| || |||||||| Sbjct 20039 CTTCTGGTAGTTGAA--CACTCCATCCTCCACAAACTTGGGGAGGGCCACAGACGCCAGG 20096 Query 80917 TTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAA 80976 |||||||| |||||||| || | || |||| | || || |||||| || Sbjct 20097 TTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGTTGCTC 20156 Query 80977 GACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCAC 81036 || || || || ||||| | |||||| |||||| |||| ||||||||||| | Sbjct 20157 GAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGC 20216 Query 81037 ATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCC 81096 ||| |||| ||| ||||| | ||| | | ||||||||| ||| | || | || Sbjct 20217 ATGAACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCA 20276 Query 81097 TTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTT 81155 |||| | |||||| || || | | ||||| |||| || || ||||||| Sbjct 20277 TTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGTC-TCGAACTC 20335 Query 81156 GGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGT 81215 | | || || ||| | ||| ||| || ||||| | ||| ||| | | Sbjct 20336 GTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACT---T 20392 Query 81216 GTCGTTC---TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTC 81272 | ||||| || ||| ||||||||| || |||| ||| || ||| ||| ||||| Sbjct 20393 GCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTC 20452 Query 81273 GCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTC 81332 ||| ||| | ||| | || ||||| ||||| ||| || || || | | ||| Sbjct 20453 GCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTC 20512 Query 81333 CGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTT 81389 || ||||| |||||||| || | ||||| ||| || ||||| | || ||||||| Sbjct 20513 GGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTC 20572 Query 81390 GACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGA-C 81448 || || ||||| || | || || || | || ||| |||||||| || | || ||| | Sbjct 20573 CACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGT-TGGATGATC 20631 Query 81449 CGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGC 81508 ||||||| || ||| | ||||||| | ||| || || || || | Sbjct 20632 CGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTAATGCCAATAC 20691 Query 81509 CACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGC 81568 | || | |||||| || || || ||| | || | || || ||||| ||||| || Sbjct 20692 CTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCG 20751 Query 81569 TATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCAT 81628 || | | |||| | |||| |||||| |||| ||| || | | |||||| | Sbjct 20752 AGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGGCGT 20811 Query 81629 TGAACAGTGTTGGGGTCGCGTGAATGAAATAAC-GGTTTGACATCAGGTCATAGGT-TTC 81686 | || || || || |||||||| | ||| ||| | |||||| || ||||| || | | Sbjct 20812 TAAAGAGCGTGGGCGTCGCGTGCGT-AAAGAACATCTGTGACATGAGCTCATACGTGTGC 20870 Query 81687 CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTG 81746 || ||| ||| || || | ||||||||| | || || ||||| | ||| | ||| Sbjct 20871 AGTGCCGCCTGG-ATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCATCTGCTG 20929 Query 81747 GGG 81749 ||| Sbjct 20930 GGG 20932 >seq42 Length=76411 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || |||||||| || || || || || ||| | Sbjct 56528 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 56587 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | || ||||| ||||| || ||||||||||| || || || |||||| Sbjct 56588 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 56647 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 56648 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 56706 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || | || ||||||||||||| ||| Sbjct 56707 CATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTTCGCGGCGGA 56755 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || |||||||| || || || || || ||| | Sbjct 56300 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 56359 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | || ||||| ||||| || ||||||||||| || || || |||||| Sbjct 56360 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 56419 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 56420 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 56478 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || ||||||| || ||||| Sbjct 56479 CATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 56526 >seq3552 Length=1496 Score = 127 bits (140), Expect = 2e-24 Identities = 351/533 (66%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| || | |||||||| || || |||||||||| ||||||| | || || | Sbjct 418 TGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGG 477 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | || || | ||||||| ||||| | | ||| || | |||||||||||| Sbjct 478 TGCACGACCTGAAGGACTGGGGGAACCTGA-CGGACAACGAGCGCCACTTCATCAAGCAC 536 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 || |||||||||||||| | || ||||| || ||| ||||| ||| | || || Sbjct 537 GTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCGATGAACTTC 596 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAA 64557 | || || || || | || ||||| || | ||||| | | ||| | ||| Sbjct 597 AGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 656 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAG 64617 | || || ||| ||| ||||| |||| |||| || | ||| | || ||| Sbjct 657 AACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGAG 716 Query 64618 AAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGG 64677 |||||| || | | || || ||||| | || || || ||||| ||| Sbjct 717 AAGGATCACTTGCTGCGTGCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGG 776 Query 64678 GCCATCCGGTGGA-TGAA--TCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCC 64734 || || |||| ||| ||||| ||||| | ||||||| || || ||| Sbjct 777 GCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCCTACCCGGAGCGTCTGCTGGCGTTCGCC 836 Query 64735 TGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGG 64794 ||||| || |||||||| || || || ||||| || || |||||||| || ||||| Sbjct 837 GCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGC 896 Query 64795 GGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 ||||| ||||| |||||| || ||||||||||| ||| ||||||||||| Sbjct 897 GGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 949 >seq847 Length=11890 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 3583 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCG 3642 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| ||||||||||| || ||||| || ||| Sbjct 3643 TCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGAC 3702 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || || || | ||||| Sbjct 3703 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 3762 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 3763 AACATCCAGAAGG 3775 >seq340 Length=28314 Score = 125 bits (138), Expect = 8e-24 Identities = 210/302 (70%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 31950 TGAAGATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAA 32009 || ||||| | |||| || | || |||| |||||||| ||| || ||||| || Sbjct 15963 TGCAGATAACCAGCGATCGCTGCCCTCGGTGGTTGACGGCCTGAAGATCTCGCAGCGTAA 16022 Query 32010 GGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTC 32069 |||| | | ||| ||||| || || || |||| || | |||||||| |||||| | Sbjct 16023 GGTGCTTTTCGCATGCCTGAAACGTAAGCTAACGAGCGAGGTTAAGGTGGCACAGCTGGC 16082 Query 32070 GGGCTACGTGGCAG--AGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACC 32127 ||||||| |||| |||| ||||| || ||||| ||||| || || || || || Sbjct 16083 GGGCTACT--GCAGTGAGCATACGGCTTACCACCATGGCGAAGCTTCACTGCACTCGACG 16140 Query 32128 ATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCT 32187 ||||||||| | || ||| | || || || | || ||||| | | | || || Sbjct 16141 ATTGTCAACATGGCGCAGGATTTCGTGGGATCCAACAACCTTCCGCTGTTGTATCCTTCA 16200 Query 32188 GGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTC 32247 || || || || ||||| || || ||||||||||| || ||| | |||||||||||| Sbjct 16201 GGTCAATTCGGTACCCGTCTGCAAGGAGGCAAGGATGCCGCTAGCCCTCGTTACATCTTC 16260 Query 32248 AC 32249 || Sbjct 16261 AC 16262 >seq134 Length=47979 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || | || || ||| | Sbjct 15347 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 15288 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| ||||||||||||||||| || || || || |||||| Sbjct 15287 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 15228 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || ||||| ||||| ||||| || || || | || || || ||| ||||| || Sbjct 15227 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGC-GACTACAA 15169 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || ||||||| || || || Sbjct 15168 CATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 15121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570276167118240