Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq134 132 1e-25 seq42 118 3e-21 seq847 109 1e-18 >seq134 Length=47979 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || || || ||||||||| | || ||||| || ||| Sbjct 15344 CAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCGGAC 15285 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || ||||||||||| ||||| ||||| || |||||||| Sbjct 15284 TCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 15225 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| ||||| || | || || ||| || ||| || Sbjct 15224 CGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAACATC 15165 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 15164 CAGAAGGAGTCTACGCTGCACCTGGT 15139 >seq42 Length=76411 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || ||||| || || ||||| || ||| Sbjct 56303 CAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGAC 56362 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 56363 TCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAG 56422 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 56423 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 56482 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 56483 CAGAAGGAGTCTACGCTGCA-CTTG 56506 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || ||||| || || ||||| || ||| Sbjct 56531 CAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGAC 56590 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 56591 TCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAG 56650 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 56651 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 56710 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 56711 CAGAAGGAGTCTACGCTGCA-CTTG 56734 >seq847 Length=11890 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || || || || || ||| Sbjct 3589 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCCGAC 3648 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| ||||| || || || |||||||| Sbjct 3649 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 3708 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 3709 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 3768 Query 178104 CAAAA 178108 || || Sbjct 3769 CAGAA 3773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203657139685588