Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq174 154 3e-32 seq9 136 8e-27 seq448 96.9 7e-15 seq917 95.1 3e-14 >seq174 Length=41958 Score = 154 bits (170), Expect = 3e-32 Identities = 858/1358 (63%), Gaps = 69/1358 (5%) Strand=Plus/Plus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||||| | |||||| || |||||| || | || |||||||| ||| ||||| Sbjct 20325 ATGTACGTGGTCAAGCGCGATGGGCGCTCCGAGGAAGTCAAGTTCGACAAGATCACGGCG 20384 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCC 248538 ||||||| |||||||| || || ||| | || ||| || || || ||| | Sbjct 20385 CGCATCACCAAGCTCTGCTACGGACTGAACCCGGACTATGTGGACGCCGTCAAGATCTCG 20444 Query 248539 CAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCT 248598 ||||| || | ||||||| ||| |||| ||||| ||| | || |||||| | || Sbjct 20445 CAGAAGGTCGTGGCGGGCGTGTACCCCGGCGTAACCACGTCCGAGCTGGACGAGCTGGCC 20504 Query 248599 GCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGGAG 248657 || |||||||| |||||| | | ||| ||||| |||| ||| |||||| | | | Sbjct 20505 GCCGAGACGGCCGCGTACCAGAGCAC-GCAGCACCCAGACTTCTCCAAGCTGGCGGCGCG 20563 Query 248658 GATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGA 248717 |||||||| || | || ||||| | ||||| || ||| || | ||| | | Sbjct 20564 CATCGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTCTTCAGTGACAACATCGAGGT 20623 Query 248718 CCT--------ACATGC-CTATGGGATGG------------------TCGCCGATGACGT 248750 | | ||| || | | || || ||||||| ||||| Sbjct 20624 CTTCCACAAGAACACGCACGAGAAGACGGGCGCCGCGGCGCCGCTCATCGCCGACGACGT 20683 Query 248751 CCACAC---CGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAA 248807 | | ||| || || |||| | || || || || || | ||| | Sbjct 20684 GTATGCGCTCGTGATGGAGCACAAGG---ACGAGCTTAACTCGGCCATCATCCACGACCG 20740 Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 || || |||||||| | ||| | ||||| ||||| ||| || ||| || | Sbjct 20741 GGACTTTGAGTACGACTACTTCGGCTTCAAGACGCTCGAGCGGGGCTACCTCTTCCGCGT 20800 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | || ||| ||||||| || ||||| ||| | ||||| ||||| | || ||||| Sbjct 20801 GAACGGAAAGGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATTCA 20860 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA--TG 248985 |||| | ||||| || | || | ||||| ||| | | | || | Sbjct 20861 CAAGCAAGACATCCAGGCGGCACTGCACACGTATGAGCTCATG--TCACAGATGTTCTTT 20918 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTC 249041 || || || || || |||||||| |||||||| || |||| || |||| || Sbjct 20919 ACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCA----GCTGTCGTC 20974 Query 249042 GTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACA 249101 ||| || || || |||||||| |||||||| | || |||||||| |||||||| || || Sbjct 20975 GTGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCA 21034 Query 249102 GACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161 | ||| || || || | || || || || || | | | ||||||||| || Sbjct 21035 GTGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGCATGCACAACATCCGCGC 21094 Query 249162 GAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGAT-GGTATCGTACCCCTCCTTC 249220 | | |||||| || || || || ||| | || ||| | ||| | || Sbjct 21095 CACGAACAGCTACATCCGCGGCACGAACGGA-TCATCCAACGGGATCATCCCCATGCTGA 21153 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | ||| | ||| ||| | | | |||||| || || || || || |||| Sbjct 21154 GGGTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGT 21213 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| || |||| ||||||||| || | || ||||||||||| || |||| Sbjct 21214 TCGCCATCTACCTGGAGCCGTGGCACGCTGACGTGTTCGAGTTCCTGGAGCTGCGCAAGA 21273 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || ||||||||||||| | ||||| ||||||||||||| ||||||||| |||| Sbjct 21274 ACCACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATC 21333 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCC 249457 |||||||| || || | || ||||| | |||| ||| | | || || |||| Sbjct 21334 TGTTCATGAAGCGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCC 21393 Query 249458 CGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATC 249515 | | ||| ||| |||| ||| ||||| | || || |||| ||||| Sbjct 21394 CCGGACTCTACGAGTGCTGGGGCGACGAGTTCGA--GACTCTGTACGAGAAGTACGAGAA 21451 Query 249516 CAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGA 249569 | || || ||||||| ||||| || | | || || || | | |||| Sbjct 21452 GGAGGGGCGCGCGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCA---TCCTGGA 21508 Query 249570 GTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGA 249628 | ||||| ||||| || | ||||| | || ||| ||| |||||| |||| |||| Sbjct 21509 CGCGCAGATTGAGACGGGCGTGCCGT-TCATGCTGTACAAGGACGCGGCCAACCGCAAGT 21567 Query 249629 GTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAA 249687 ||||| | | | || || || ||||||||| || | || ||| ||| | || | Sbjct 21568 CGAACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACTTGTGCTGC-GAGATTATGGAG 21626 Query 249688 TACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| |||| || ||| | || || ||||||||||| Sbjct 21627 TACACGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGC 21664 >seq9 Length=106566 Score = 136 bits (150), Expect = 8e-27 Identities = 259/380 (68%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||||||||| ||| |||| ||||| || || ||||||||||| ||||| | || Sbjct 52726 CTGCCTCATTTGCTGTTCTACGGACCTCCAGGCACGGGCAAGACGTCTACCATTGTCGCC 52667 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||| || || || ||| || | | || | ||| | || ||||||||| Sbjct 52666 GTGGGGCGTCAACTCTTCGGCCCGGATTTCCGCAAGAACGGCCGCTTCCTAGAGCTGAAC 52607 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 || || || || || || | | || || || || ||| |||||| ||| || || Sbjct 52606 GCATCCGATGACCGAGGCATTAAGGTGGTGCGAGAGAAGGTCAAGAGCTTCGCCCAGGGT 52547 Query 254178 TCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCG 254237 | || | || |||| |||||||||||| || | | ||||| |||||| Sbjct 52546 GCCATCAGCACTGTCAG---CGGCCTACCGCCTTTCAAGATCATCGTGCTGGATGAGGCG 52490 Query 254238 GACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTT 254297 ||| | ||||||| ||||||||| || || || ||||| | |||||||| ||||| Sbjct 52489 GACTCTATGACGGGCGACGCGCAATCGGCGCTGCGCCGCATGATGGAGAACTACTCCAAG 52430 Query 254298 GTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCT 254357 || ||||| || ||||| | || ||||||||| ||||| | || |||| || Sbjct 52429 GTCACGCGCTTCTGCCTCATCTGTAACTACGTGAGCCGCATCATTGAGCCTGTGGCCTCA 52370 Query 254358 CGGTGCGCCAAGTTTCGATT 254377 || |||||||| ||||| || Sbjct 52369 CGATGCGCCAAATTTCGCTT 52350 >seq448 Length=24230 Score = 96.9 bits (106), Expect = 7e-15 Identities = 397/609 (65%), Gaps = 24/609 (4%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 1051 ACACCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 1110 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||| |||||||| ||||| ||||| |||||| | |||| ||||| Sbjct 1111 GAGATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGT 1170 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 || |||| | ||| ||||| |||| |||||||| |||| | | | || Sbjct 1171 GAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATG 1230 Query 157424 CCGATGAGCGCGACGGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTG 157482 ||||| ||| | ||||| |||| | || | ||| ||| ||||| ||||||| Sbjct 1231 CCGATCAGCTCCACGGGGAGCG-AGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTC 1289 Query 157483 CTTGAAAATTTCATGAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGA 157541 | || | || || | ||| | ||||||| | ||| | | | ||| |||| Sbjct 1290 ACGCACGATCGCGTGCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGTACATGA 1348 Query 157542 -GAACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACG 157598 | ||| |||| |||| ||| | || ||||| | | |||||| ||||| ||| Sbjct 1349 GGCACGCGAAGTCCGT---GTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGC 1405 Query 157599 ACAAACC---CTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCAC 157655 || ||| | ||| | | |||||||| |||||| |||||| |||||| || || Sbjct 1406 TCAGACCAGGCATGA--GGCCG-CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCG 1462 Query 157656 TGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCG-AG--TGAAGCGG 157712 ||| | |||||||| || ||| | | || | ||||| | || ||| | Sbjct 1463 AGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAAC-- 1520 Query 157713 TTTCGGGGTTCA-TCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTC 157771 || || ||| |||||| |||||| | |||||||| || | | || |||||| Sbjct 1521 --ACGAGGGTCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTC 1578 Query 157772 TGGATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGC 157831 | ||| | |||| | ||| || ||| | | |||| ||| ||| || | || ||| Sbjct 1579 TCGATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGC 1638 Query 157832 AGAGAGTAC 157840 || |||||| Sbjct 1639 AGCGAGTAC 1647 >seq917 Length=11559 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || || |||||||| || || |||||||||||| | | | Sbjct 7447 ATGGCGCAGCGGCTCTGGATGGGCTCGATGATCTTAGTCGAGTTGTTGCAGGCCAGCGCG 7388 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 |||| ||| ||| |||| | | |||||| | || ||||||||||| || | | | Sbjct 7387 AACCTCGTGGTGGCCGAGAAGATCTCCATGGTGCGGCGCAGCGCCTGTTGGGCCGCGGCT 7328 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| || ||||| || | |||||||| Sbjct 7327 GTCATCGAGTCGGCTTCGTCCAGGATCACAATCTT 7293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073705192295232