Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq448 178 2e-39 seq174 150 3e-31 seq455 109 8e-19 seq234 96.9 5e-15 >seq448 Length=24230 Score = 178 bits (196), Expect = 2e-39 Identities = 600/916 (66%), Gaps = 50/916 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| ||||| |||| || || Sbjct 1928 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTC 1869 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | |||||| | || |||| || | |||| Sbjct 1868 TGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAACC---TGACG 1812 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| | || || |||| | | || ||||| || | | ||| || ||| Sbjct 1811 GACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATC 1752 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TG 125233 || ||||| || ||| || ||| | ||| || | || |||| ||| || Sbjct 1751 GTGAACGAGAACCTGGCGATGAACTTCAGCAATGAGGTGCAAGTGCCGGAGGC-TCGCTG 1693 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| || |||||| | |||||||| ||||||| ||||| Sbjct 1692 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGAT 1633 Query 125294 TGACATGTACATTCGCGAT-CCGCAACGTA--AACACATGCTCTTTAACGCAATCGACAC 125350 |||| |||||| || ||| | | | ||| |||| | || ||||| || Sbjct 1632 CGACACGTACATCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGT---GCCATCGAGAC 1576 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | | |||| | || ||||| | |||| | | |||| || | | || Sbjct 1575 GATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC--CCTCGTGTT 1518 Query 125411 T--TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | || ||| | || | ||| |||| ||||||||||| |||||||| ||||| |||||| Sbjct 1517 TCGTCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGT 1458 Query 125469 AGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 || ||| ||||||| ||||||||||||||||| |||||||| || |||| | Sbjct 1457 TCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTC 1399 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC---CAT--TCTACT- 125581 |||||| | || || ||||||||| | ||| ||||| || | | | |||| Sbjct 1398 GAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTC 1339 Query 125582 ---GTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 ||| ||| | |||| | ||| || ||| || | | || Sbjct 1338 GAAGTTGGTGAACAAGCTGCC--------GGAGAGCC-GCG-TGCACGCG--------AT 1297 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCA 125697 || || || ||| ||| || || ||||| | | ||| || || || || ||| Sbjct 1296 CGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGC- 1238 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 |||| |||||||||| ||| |||||| ||||||| ||||| ||||| || || || | Sbjct 1237 TGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGC 1178 Query 125758 TGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 ||||| || || |||||| ||||||| ||||| || || || | ||| | Sbjct 1177 TGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATA 1118 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACG 125875 || || || |||| ||||||||||| ||||||||| || ||||||| | || | Sbjct 1117 TGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACTCCAAGG 1058 Query 125876 CTACGGTGTCGGTGTC 125891 || ||||| |||||| Sbjct 1057 CT--GGTGTGGGTGTC 1044 >seq174 Length=41958 Score = 150 bits (166), Expect = 3e-31 Identities = 335/496 (68%), Gaps = 10/496 (2%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| ||||| |||| || |||||||| ||||| || || || | ||| ||||||| ||| Sbjct 21216 GCCATCTACCTGGAGCCGTGGCACGCTGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAAC 21275 Query 96966 TCTGGCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTT 97024 ||| || | |||| | || | ||| | || || || || ||||| || ||| | Sbjct 21276 CACGGCAACGA-GCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCT 21334 Query 97025 GTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACC 97084 |||||||||||| || | | ||| | |||||||| | |||||| | | | || Sbjct 21335 GTTCATGAAGCGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCCC 21394 Query 97085 CGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGA 97144 ||| || | ||| ||||||||||| ||||| ||| | |||| | |||||| | || Sbjct 21395 CGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGGA 21454 Query 97145 GGGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTC 97203 ||| || || |||||| || |||| | | |||||| |||||| || || | Sbjct 21455 GGGGCGCGCGCGCAAGACGA-TCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGC 21513 Query 97204 AGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACC 97263 || | ||||| || |||| ||| || |||||||| | | || ||||| |||| Sbjct 21514 AGATTGAGACGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACC 21573 Query 97264 AACGCCACTTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACG 97320 | | || | ||||| ||| |||| ||| ||||| || ||| | |||||| Sbjct 21574 AGCAGAACCTCGGCACGATC---CGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACA 21630 Query 97321 CCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAG 97380 | || || || ||| ||| || ||| ||||| || || || ||||||||||| | Sbjct 21631 CGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGG 21690 Query 97381 AGGGTAAAGTGTTTAA 97396 ||| | |||||| || Sbjct 21691 AGGATGGAGTGTTCAA 21706 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || | || || | || ||| | || Sbjct 22362 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCCGTGTTGGACCTGTCGGCGGACCGTGGC 22421 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| |||||| || ||| | || | || ||||||| || || || Sbjct 22422 GCCTACATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCCGACCCGACGATTAGCAAG 22481 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 |||| || || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 22482 CTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 22537 >seq455 Length=24128 Score = 109 bits (120), Expect = 8e-19 Identities = 278/415 (67%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 ||| ||| || || || || || ||||| ||||||||| | || | ||| ||| ||| Sbjct 22510 AAGTGGGTGACCTCGGACCTGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAGGTACA 22451 Query 70122 TAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGA 70179 ||| ||| | | ||||| | || ||||| || || || |||| || | ||| | Sbjct 22450 CGGACATGCACG-CGGACTACACTGGACAGGGCGTGGACCAGCTTGCTGAGG-TGATTCA 22393 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || || || || || || | ||||||| ||| | ||||| ||||| || Sbjct 22392 CAAGCTGCGTACGAACCCGACGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCTGA 22333 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATG 70298 | || || | |||||||| |||||||| ||| |||| || || || ||| | || | Sbjct 22332 TCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGC-CAATTCTACGTGGCGGACG 22274 Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358 | | ||||| || ||||| ||| | ||||||||||| || ||||| || |||| Sbjct 22273 GGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTTTA 22214 Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418 ||||||||||||| | || | |||| | | || || | | || ||||| | Sbjct 22213 ACATTGCAAGCTACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACCTG 22154 Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || || | ||| || |||||||| || |||||| | || ||| | ||||| Sbjct 22153 GTGAATTTATTCACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGCC 22099 >seq234 Length=35147 Score = 96.9 bits (106), Expect = 5e-15 Identities = 215/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||||||||||||| ||||| || || |||||||| | ||||||| Sbjct 6434 GAAGCCGTGGGTCAGGTGGCCTCCACTGGGCAAGTCCAGACCCATGATGCGGTCGTGCGG 6493 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| ||||||||| ||||||||| || || || Sbjct 6494 GCGCAGCAGAGCCGTGTACACGGCGAAGTTGGCCGGGCTGCCCGAGTAAGGCTGCACGTT 6553 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCT-GAGACATCGCTGCTGTGCTAGCA 127621 || ||||| | | ||| | || | |||| | || || |||||||| || | Sbjct 6554 GACGCCCCACTTGTCCTCCTCCAGGCCGTACGCCGTCAAGGCA-CGCTGCTGGCACAGGA 6612 Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTC 127679 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 6613 TCTCGATCTTGTCGATGACCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTC 6670 Query 127680 CGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTT 127739 | |||||||||| |||| ||||| | || ||| || || | | | || ||||| Sbjct 6671 GGCGTACTTGTTGGTGAGGCACGATCCCAGGCAGTCCATGACGGCGCGCGACGTGAAGTT 6730 Query 127740 TTCCGATGCGATCAACTC 127757 ||||| ||||| | ||| Sbjct 6731 CTCCGAAGCGATGAGCTC 6748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741017987845240