Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq174 241 1e-58 seq46 150 2e-31 seq163 127 2e-24 seq1193 104 2e-17 seq69 96.9 3e-15 >seq174 Length=41958 Score = 241 bits (266), Expect = 1e-58 Identities = 951/1469 (65%), Gaps = 38/1469 (3%) Strand=Plus/Minus Query 145030 CTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACG 145089 || ||||| || | || | ||||| || |||| | ||||| || |||| ||| || Sbjct 22265 CTCGATCAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCG 22206 Query 145090 ACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGC 145149 || |||| ||| |||||| | || || | ||||| || ||||||| || ||||| Sbjct 22205 GCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGC 22146 Query 145150 GGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGAT 145209 |||| || |||||||| ||||| | | || ||||| | ||||||||| | | Sbjct 22145 CGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCAC 22086 Query 145210 GTCTTCCTTTAGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTC 145266 || ||||| |||| | |||||||||| | ||||| ||| | ||| |||||||||| Sbjct 22085 GTTCTCCTTGAGCGCAGCCCAATCCCACAAGCCCGAAGACGGGGTGACGCCCCACATGTC 22026 Query 145267 GTACTGCAAAATGCCCTCGCTGGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAG 145325 | |||| || || |||| |||||| || | | ||| ||| | || || | |||| Sbjct 22025 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACG--TCTCGTACGGGCCCAGC 21968 Query 145326 T-TTTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTG 145383 | ||||||| ||| || | | ||||| || || | || || |||||| || | Sbjct 21967 TCCTTGGCGATCTC-CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 21909 Query 145384 CCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCAT 145442 | ||||||| |||| ||||||| || |||| | || || | ||| |||| Sbjct 21908 CATGTTGAGTTCACGGGCTTGCGGGCTCTCGAAC-GCATAGTTCATGAGGATAAATGCAT 21850 Query 145443 CGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCG 145502 | ||||| ||||| | || | || | || || || ||||||| | | | |||| Sbjct 21849 CCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCT 21790 Query 145503 ACTCGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTT 145561 ||| | || || | | | || ||| || | || |||||||| || || ||||| Sbjct 21789 CCTCCACGGGGTAGTAGTTGAC-GTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTG 21731 Query 145562 GTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTG 145621 || | | || ||| | ||| ||| ||| || | ||||| | | | Sbjct 21730 GTCACCTCGTACAGCTTCTGGTAGTTGAAC----ACTC--CATCCTCCACAAACTTGGGG 21677 Query 145622 ACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGAT 145680 | ||| | ||||||| || || || ||| ||| || |||| || |||| | | || Sbjct 21676 AGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAAT 21618 Query 145681 CTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT 145740 |||| |||||| ||||| | ||| || || || || ||||| || || | ||| Sbjct 21617 CTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 21558 Query 145741 GCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--A 145798 | |||||||||||| |||||| |||| |||| ||||| | ||||| |||| ||| Sbjct 21557 GGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGC 21498 Query 145799 AAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTC 145858 ||| || | ||| ||| | | || | ||| ||||| | ||||| ||| Sbjct 21497 GAAC--CACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTC 21440 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 ||| || ||| ||| || || |||| ||| | || ||||| || ||||| Sbjct 21439 TCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGG 21380 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | || ||| |||||| || | || |||| ||| |||| ||| || |||||| Sbjct 21379 CAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCAC 21320 Query 145979 AGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAA 146034 || ||||| | | || ||||||| |||| ||| | || || ||| || || Sbjct 21319 AGAGCGTAGAAGAGGTCGCGCGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTGC-GCAG 21264 Query 146035 ATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTT 146093 | || | ||| | | ||| ||||||||||| || | |||| ||||| | |||| Sbjct 21263 CTCCAGGA-ACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTT 21205 Query 146094 TTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGG 146150 | || ||| || ||||||||||| | || || ||| || ||||| | || ||||| Sbjct 21204 TGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGG 21145 Query 146151 GCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGC 146210 | || ||| ||| | |||||||| | || | || || ||| | | Sbjct 21144 GGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGT 21085 Query 146211 AATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCG 146270 || | | | ||| | ||| ||| | ||||||| || ||||| | ||||| Sbjct 21084 TGTGCATGCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCG 21025 Query 146271 TCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCT 146330 | ||||| ||||| ||||| ||| | ||| | ||||| || ||||| ||| || Sbjct 21024 TGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCT 20965 Query 146331 GCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGC 146390 ||| |||||| || || || | ||| || ||||||||||||| | | | Sbjct 20964 GCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTG 20905 Query 146391 TCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGA 146450 ||| | | |||||| | | || | || ||||| | ||||| |||| || | Sbjct 20904 ACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCA 20845 Query 146451 CGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 ||||||||| ||| || ||||| |||||| Sbjct 20844 CGCGCATGATCATCTGCTGGGGGCGCTCC 20816 >seq46 Length=70552 Score = 150 bits (166), Expect = 2e-31 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| || || | || |||||||| || |||||||| ||||| Sbjct 50612 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 50553 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 50552 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 50493 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| |||||||||||| | | || | | || | | ||| | Sbjct 50492 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 50433 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTAT 131246 ||| | || | ||| || || || | || || ||||| ||||||||| || ||||| Sbjct 50432 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG--TTCTTTTAG 50375 Query 131247 TC 131248 || Sbjct 50374 TC 50373 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| || || | || |||||||| || |||||||| |||||| Sbjct 50839 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 50780 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 50779 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 50720 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||||||||| | | || | | || | | ||| | | Sbjct 50719 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 50660 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || | || || ||||| ||||||||| Sbjct 50659 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 50612 >seq163 Length=42801 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| | || | || |||||||| || |||||||| ||||| Sbjct 11673 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 11732 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||| || ||||||||||| ||| | || | ||||||||||| || || Sbjct 11733 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 11792 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||||||||||| | | || | | || | | ||| | Sbjct 11793 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 11852 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | ||| | || || || || | ||| || ||||| |||||||| Sbjct 11853 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 11900 >seq1193 Length=7772 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 3998 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4057 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || || || ||||| ||||| |||||||||||||| | | Sbjct 4058 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 4117 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 4118 CAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 4177 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 4178 AGATCTGCATGA 4189 >seq69 Length=60124 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| ||||||||||| || Sbjct 30536 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 30595 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 30596 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGG 30655 Query 131128 ATTCCT 131133 |||||| Sbjct 30656 ATTCCT 30661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471986550188160