Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq46 100 2e-16 seq174 87.8 2e-12 >seq46 Length=70552 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || || || || || || |||| || || ||||| | Sbjct 50382 AACATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCT 50441 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| | | || || ||||| |||||||||||||| || || ||||| Sbjct 50442 TCGGACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGAC 50501 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| ||||| | ||| ||| Sbjct 50502 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 50561 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || || | || || || |||| |||| || || Sbjct 50562 AACATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 50611 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || ||||| | | Sbjct 50613 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 50672 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| |||||||||||||| || || ||||| || Sbjct 50673 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 50732 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 50733 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 50792 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| | ||||| || Sbjct 50793 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTTCGCGGCGG 50839 >seq174 Length=41958 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/295 (67%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 128980 TTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTC 129039 || || ||||||||||| ||||| ||| | || || | || || || | ||| Sbjct 22384 TTGATCTCCCACACCGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTC 22325 Query 129040 TGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAAT--TCA 129097 |||||| ||| || || | ||| | ||| |||| | | | || || || || Sbjct 22324 TGCACGGAGCCACCGTCAGCCAGAATCTGGTTGCGCACC--TCAGGCGTCCAGATGCCCA 22267 Query 129098 GTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA-CTTGAAAGTCACCCGCCAAAACG 129156 | | ||||| || | | | ||| ||||| | | | || || ||||| |||| ||| Sbjct 22266 GCTCGATCAGCTCCTTCATGAGGTACTTGTTCACGATCGTG-AACTCACCAGCCAGCACG 22208 Query 129157 CGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGA 129216 || || ||| ||||| ||| ||||||| | || ||||||||||| || || ||| Sbjct 22207 CGGCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGA 22148 Query 129217 GCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTTCGCAAACCGTGCT 129271 ||||| | ||| |||||||| ||||||| |||||||| || | ||||||| Sbjct 22147 GCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCT 22093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419705241429685