Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq28 223 6e-53 seq448 217 3e-51 seq360 168 1e-36 seq46 158 2e-33 seq163 140 6e-28 seq1193 129 1e-24 seq155 111 3e-19 seq548 102 2e-16 seq174 86.0 1e-11 >seq28 Length=82534 Score = 223 bits (246), Expect = 6e-53 Identities = 388/554 (70%), Gaps = 14/554 (3%) Strand=Plus/Minus Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306 || ||||| |||||| ||| |||||||| || || |||||||| || ||||| || Sbjct 40937 TGAAGCATGCGCCACATGCATTCCACATAGTCACGGGCGTGGCCCCAGTCACGCTTGGCA 40878 Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGC--AAGACCGC 268364 |||| ||| || | || ||||| ||| | || |||| ||| | ||||| Sbjct 40877 TCCAGGTTGCCCACAAAGAGGCACCTCTCAATCCCCG----CACGAATGCGCACCACCGC 40822 Query 268365 --GAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAG 268422 | ||||| || ||||||||||| || || ||| | || |||||||||||||| || Sbjct 40821 ACGCGTGATCTTGCGGGTCACGAAGGTTGGTCCGCGTCGCGGACTCTCGTGGTTGAACAG 40762 Query 268423 GATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATG 268481 || ||||| ||| ||| |||| || || || || |||| |||||| || |||| | | Sbjct 40761 AATCCCGTT-CACGGCGTACATCCCGTAGGCTTCTCGGTGGTTCACCACACTCCAAAACG 40703 Query 268482 CAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATC-TTTTGA 268540 ||||| ||| || || ||||||| || || || ||||| ||||| || || | || Sbjct 40702 CAAACTGCTTCGCTACACCGTACGGTGAGCGCGGGTGGAACGGCGT-GTCTTCATCCTGT 40644 Query 268541 GGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTT 268600 ||| | || | |||||||| || | ||| || || |||||||||||| || | Sbjct 40643 GGGGTGGCTTGCACTTTGCCGAATAATTCGCTCGTAGACGCTTGGTAGAACCGCGTCGAA 40584 Query 268601 TTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACG 268660 | ||||| || || | || | | |||| ||| || | ||||| | || ||| Sbjct 40583 TGCTCGAGCCCACACGTGCGCAAACACGTCAGCAGACGCAGCGCTCCCAGCGCGTCGACG 40524 Query 268661 TCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTA 268720 || || || ||||| | |||||| || || || | |||||| | ||||||||||| Sbjct 40523 TCTGCCGTGTACTCGGCCATCTCAAACGAGACTTTAACATGGGACATCGCGCCCAGGTTG 40464 Query 268721 TAAACCTCATCCGGTTTGACCTGCTGCACGATCT-TCACGAGGTTCGTTGAGTCGGTGAG 268779 || || ||||| |||| ||| || |||||||| ||| || |||| | ||| ||||| Sbjct 40463 TACACTTCATCGGGTTGGACGCGCGCCACGATCTGGCAC-AGATTCGACGCGTCCGTGAG 40405 Query 268780 GTCTCCGTAGTGCA 268793 |||||||||||||| Sbjct 40404 GTCTCCGTAGTGCA 40391 >seq448 Length=24230 Score = 217 bits (240), Expect = 3e-51 Identities = 618/938 (66%), Gaps = 29/938 (3%) Strand=Plus/Plus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATGACGCCC------GC 9946 ||| ||||||||||| | | ||||| | ||| ||||| | ||| ||| || Sbjct 1002 TTAAAAGTCTGCGTCCAGAGTGAACACCTGGTCCTCGGC---CGCGACACCCACACCAGC 1058 Query 9947 CTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAG 10006 ||| |||||| || || |||||||||||||| |||||||| || || || | Sbjct 1059 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 1118 Query 10007 CTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAA 10066 ||||| |||| || ||||||| || | ||||| ||| |||| | Sbjct 1119 ATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAG 1178 Query 10067 AATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCAT 10126 | |||||| |||||||||||||||||||||| ||| || | ||||||||||| |||| Sbjct 1179 CAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCA- 1237 Query 10127 GCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGA 10185 || || ||||| | ||||| | ||| || | || | | || || || |||| Sbjct 1238 GCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGA 1297 Query 10186 TGCTCTTTACCACG--TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCC 10243 | | | | | || || || |||||||||| | | |||||| |||| ||| | Sbjct 1298 T-CGCGTGCACGCGGCTCTCCGG-CAGCTTGTTCACCAACTTCGAGTACATGAGGCACGC 1355 Query 10244 AAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGG 10303 || | | ||| | ||||||||| |||||||||| |||||| || || | |||||| || Sbjct 1356 GAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGG 1415 Query 10304 CATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACC 10363 |||||| || || || |||||||| |||| |||||| || || ||||| | || || Sbjct 1416 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCC 1475 Query 10364 CTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCGCGA---AAAGTA 10420 ||||||| | | || | || ||||| | | |||| | || | | | | Sbjct 1476 CTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACACCA 1535 Query 10421 TTTCGAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGC---CTCGA 10476 || ||| ||||| |||||||| ||||| |||||||||||||| || | | Sbjct 1536 CTT-GAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCA 1594 Query 10477 AGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCT 10536 || | | || | ||| |||||| || | || | ||||| ||||| || Sbjct 1595 AGTGATCCTTCTCCACGG---CGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCT 1651 Query 10537 CGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCG 10596 | ||||| | |||| || |||| | ||||||| || ||| || | Sbjct 1652 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTT 1711 Query 10597 TGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAA 10656 || || | | ||||| | ||||||||| |||| ||||| |||||| | || | Sbjct 1712 GCACCTCATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 1771 Query 10657 AGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGT 10716 |||| | || | ||||||||||||||||||||| | || |||| || | ||||| Sbjct 1772 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTT---CCCCCAGT 1828 Query 10717 CTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCT 10776 | || || || || | | |||||| | |||||||| | || | ||||||| Sbjct 1829 CCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCT 1888 Query 10777 TGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 |||||||||| | | |||| | | | |||| |||||| Sbjct 1889 TGTACATCTGCCACACGTCGTGCTCCTGGATCGGGAAC 1926 >seq360 Length=27861 Score = 168 bits (186), Expect = 1e-36 Identities = 440/664 (66%), Gaps = 24/664 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||| | |||| ||| ||||| |||||| ||||||||||| Sbjct 13524 CGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAGGTGAGACTCAATGTGGTGGAAAGCG 13465 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 |||||||| || || || | |||||| || ||||||||||| ||| | || || Sbjct 13464 TGCTGGGCCACATAGGCGAAACGCATGGAAGGGTGCTTCCACACCTGGCCACTCGTGGGC 13405 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | ||||| | || | ||| || ||||| ||||| |||| | Sbjct 13404 TCAACCTCACCCGTCAGCATTTTGATCATGGTCGACTTTCCGGCACCGTTGGGTCCAAGC 13345 Query 225161 ACGCCAATCCGGGATGACATTGCA-ACCTG--CGAGTTCACGTTGCT-GAAGATCTCAGG 225216 ||| | || ||| |||| || || | ||| | |||| | || | || || Sbjct 13344 ACGGCGATACGGCTCGACAAAGCGCACGTCACCGAAATGTTGTTGATCGACGGCTTCGGG 13285 Query 225217 G--CCAGTTT---GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 | |||| | |||| | | || | ||| | |||||| ||||| Sbjct 13284 GTGCCAGGGTACTGGTACGAACAGTTCGTCAGACGAA------TGATGGGTTTACCCTTG 13231 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC---C 225328 | || | | ||||| |||||||| |||||| |||| ||| ||| | Sbjct 13230 TTCTTGATGTCGGCGAGGAAACCGGGCTCCGGGAACGTGAACTT---CACGTTGTCAGAC 13174 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388 | ||| |||||||| | ||||| || || ||||||||||||| ||||| || Sbjct 13173 TCCAGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCCACGAAAGCAGAAAGGTTGCCC 13114 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 || || | ||||| | | ||||||| |||| || | || || | ||| Sbjct 13113 TTGTAGATCTTCAGCTTACG---CGTCTCGTAGTGAATGATGTTGGTACAGACAGTGTCG 13057 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| ||||||||||| ||||| |||||| || |||||||| ||||| | | |||| Sbjct 13056 AGGAACCCAGAGTCGTGCGACACCATGATGCTCGTCACGTTCGGCAGGCTCGTCAGGTAG 12997 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | ||||| || ||||| |||| |||| ||||| || || || || || |||||| Sbjct 12996 TTCTCCAGCCAGGCGACGTTCTTGACATCCAAATGGTTCGTCGGCTCATCAAGGAGCAGG 12937 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || | || ||||| || | || || ||||| ||||| || || || Sbjct 12936 ATGTCTGCCTTCTGCAGCATGGCACGAGCAAGCTCAAGTTTCATCTTCCAACCACCCGAA 12877 Query 225629 AGGG 225632 |||| Sbjct 12876 AGGG 12873 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||| | ||| | || ||||| ||| ||| || | ||| || | ||| || ||||| Sbjct 14068 GTGGGTAATCATGACCACACCACCGTTGAAGTCCTTGATGGCCGAAGCAAGAGCACCAAG 14009 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 ||| |||||||| ||| ||||||| |||||||| || | | | ||| ||| | |||| Sbjct 14008 CGAGTCGCGGTCGAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTGCGGGTTCAGCCA 13949 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || ||| || || | ||| | ||||||||||||||| ||||| || || || || ||||| Sbjct 13948 CATGGCAGCTCCCAGCACAACCTTCACCTTCTGACCACCAGACAGACCACGCATGCGCGA 13889 Query 224629 GTGAGT 224634 ||| || Sbjct 13888 GTGCGT 13883 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 225778 GTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATC-GGGGAAGCCCTCCAGCTGGC 225836 || ||| || ||| |||| ||| |||| || || | |||||||||||| ||||| | Sbjct 12730 GTTGTGCTCAACGAACACAGTCTTCAGCTCGGA-GCGGCTGGGGAAGCCCTCGAGCTGAC 12672 Query 225837 CATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGT 225896 | || | || || || | ||| || ||| || |||||||| ||| || |||| Sbjct 12671 CGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGCACAGACCGT 12612 Query 225897 AATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGG 225956 || | | || ||||| | | ||||| | | |||||| || ||| | ||||| |||| Sbjct 12611 AACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGCAGAATCATACCACCGTAGG 12552 Query 225957 CAAGGGAGAACTCGCAATCGCACAGGTCC 225985 |||| ||||| ||||| | |||||||||| Sbjct 12551 CAAGCGAGAATTCGCAGTTGCACAGGTCC 12523 >seq46 Length=70552 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 ||||| |||||||| |||| |||||||| ||||| ||||| || |||||||| || ||| Sbjct 50842 TTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCG 50783 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || | || || || | |||||| |||||||| || || | || |||||||| Sbjct 50782 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGC 50723 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || ||||| ||||||||||| || || ||| ||| ||||||| ||| | | || Sbjct 50722 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCC 50663 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| |||||||| || ||||| | ||||| ||||| |||||||| Sbjct 50662 ACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50613 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| ||||| ||||| || |||||||| || ||| Sbjct 50611 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 50552 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 50551 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 50492 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || ||| ||| ||||||| ||| | | || || Sbjct 50491 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 50432 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || ||||| | ||||| ||||| |||||||| Sbjct 50431 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50385 >seq163 Length=42801 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| ||||| ||||| || |||||||| || ||| Sbjct 11674 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11733 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || ||||| || || Sbjct 11734 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 11793 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| ||||| || ||| ||| ||||| | ||| | | || || Sbjct 11794 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 11853 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || ||||| | ||||| ||||| |||||||| Sbjct 11854 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 11900 >seq1193 Length=7772 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || ||||| || | || || || | |||||| |||||||| || Sbjct 4000 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4059 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || ||||||||||||||||| || || || |||||| || Sbjct 4060 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4119 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||| | | ||||| |||| |||||||| || ||||| |||||||| || || Sbjct 4120 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 4179 Query 68454 ATCTGCATTAT 68464 |||||||| || Sbjct 4180 ATCTGCATGAT 4190 >seq155 Length=43990 Score = 111 bits (122), Expect = 3e-19 Identities = 254/377 (67%), Gaps = 18/377 (5%) Strand=Plus/Plus Query 173102 ATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCG 173161 || ||||| || ||||||||||| || ||| | || ||||||||||||||||| |||||| Sbjct 33914 ATCGACACCATCATGCACTTTGCAGCCCAGTCTCACGTGGACAACTCGTTCGGGAACTCG 33973 Query 173162 CTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTC 173221 | | || | || || ||| | | || |||||||| || ||||| |||||||| Sbjct 33974 ATTGAGTTCAGCAAGACCAATATATTGGGCACCCACGTGCTGCTGGAGGCTGCGAGGCTG 34033 Query 173222 TATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACG-----GCGAGA 173276 || || || || |||||||| ||||| || ||||| || |||| | |||| Sbjct 34034 CAT---GGAGTGAAGAGGTTCATCCATGTGAGCACGGACGAGGTGTACGGAGAAGGGAGA 34090 Query 173277 GCAGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCAT 173336 | | || || | || | || || || || || ||||| || ||||| | Sbjct 34091 CCCGACTCCGCTCCGATGACG-----GAAGATCA--TGT-GCTGGAGCCGACGAACCCGT 34142 Query 173337 ATGCAGCAGCCAAGGCTGGTGCCGAAATGAT-GGCACGTGCATATCACACATCGTACAAG 173395 | || || | || || || ||||| | | | || | | || ||| |||| | Sbjct 34143 ACGCGGCCACGAAAGCGGGGGCCGAGTTCCTCGTCAAG-ACGTACCACCGCTCGTTCGGC 34201 Query 173396 CTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAAAA 173455 || || |||| | |||||| |||| || ||||| ||||||||||||| ||| || || Sbjct 34202 CTGCCGACCATCATCACGCGCAGCAATAACGTGTACGGCCCGCATCAGTACCCGGAGAAG 34261 Query 173456 ATGATCCCAAAATTTAT 173472 | ||||| || |||| Sbjct 34262 CTCATCCCCAAGGTTAT 34278 >seq548 Length=20759 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 || |||||||| | ||||||| ||| ||||||||||||||||||| | | | ||| Sbjct 3654 AGAGCGCCAAGTGCGGCGCGGTCCAGGTAGTTCGTCGGCTCATCCAGCACCAGCAGGTGT 3595 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 |||| | ||||| || ||| | | || ||||||||||||||||| || || |||||| Sbjct 3594 GGGCGGTTCCACATCGCAGCAGCGATGACAAGCTTCACCTTCTGACCACCCGACAGGCCG 3535 Query 224618 CGGATC 224623 |||||| Sbjct 3534 CGGATC 3529 >seq174 Length=41958 Score = 86.0 bits (94), Expect = 1e-11 Identities = 345/531 (65%), Gaps = 23/531 (4%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCG--GCACAAAGATTGCT-G 31757 ||||||||| || || | || ||||| || | ||||||| |||||| ||||| | Sbjct 21655 CACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG--TTGCTCG 21598 Query 31758 CCCGTGATGGTGCCGGCATTGGACTGCATGTTC---TTCACGTTCACGCTGTCCTTGTTG 31814 || ||| |||||| || |||| |||| || ||| | |||||||| Sbjct 21597 AGCG-GATCGTGCCGAGGTT---CTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAC 21542 Query 31815 AGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGC 31874 |||| | | |||| ||||||||| ||||||| | | || || ||| | | | Sbjct 21541 AGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGG 21482 Query 31875 GCTTTGA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTA 31933 || |||| || ||| | ||| |||||||| |||||| ||||| |||| | Sbjct 21481 GCATTGATCGTCTTGCG-CGCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGTCTCGAA 21423 Query 31934 CTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGC 31993 ||| | ||| || ||| || ||||| ||| |||||| ||| || ||| Sbjct 21422 CTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACTT 21363 Query 31994 GACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATT 32053 | | | || || || |||||||||||||| ||| | ||||| ||||| || || | Sbjct 21362 GCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTC 21303 Query 32054 CCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTC 32113 | ||||| || ||| | || ||||| || ||| |||||| || | | ||| Sbjct 21302 GCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTC 21243 Query 32114 GGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTT 32170 | ||| ||||| ||||| | |||||| || || ||||| || || ||||||| Sbjct 21242 AGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTC 21183 Query 32171 TGCGTATGCAGATGTCGTGTC---GTACACCTTCAGCATGGGTACGATGCC 32218 | || || | | |||||| | | ||| |||||||||| | ||| || Sbjct 21182 CACATA-GCGG--GCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCC 21135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921571146274280