Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq46 156 4e-33 seq163 134 1e-26 seq174 109 5e-19 seq1193 98.7 9e-16 seq448 96.9 3e-15 >seq46 Length=70552 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | |||| |||||| || | ||||||||| || || || ||||| |||| Sbjct 50840 TCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 50781 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 50780 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 50721 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| | Sbjct 50720 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCA 50662 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | || ||||| |||| || || || || ||||||||| Sbjct 50661 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 50612 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||||||||| || || || ||||| |||| | Sbjct 50611 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 50552 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 50551 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 50492 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| || Sbjct 50491 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCAC 50433 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||| || || || || ||||||||| Sbjct 50432 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 50384 >seq163 Length=42801 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 11686 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 11745 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 11746 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 11805 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | ||| | Sbjct 11806 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGAT 11864 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| |||| ||| || || || |||||||| Sbjct 11865 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 11900 >seq174 Length=41958 Score = 109 bits (120), Expect = 5e-19 Identities = 335/511 (66%), Gaps = 13/511 (3%) Strand=Plus/Minus Query 145701 CGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCG 145760 ||||||| | |||| ||| ||||||||||| | || | || ||| | ||| Sbjct 22596 CGAGGCC-CTGCTT----GTCCACGGTGAACTGGATGGCGTCGGCTTTCGGGCGTCCGCG 22542 Query 145761 CAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA- 145819 || ||||||||||| ||||||||| |||| ||| | ||| ||||| ||| || || Sbjct 22541 CATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAG 22482 Query 145820 --TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAA 145877 || | | | ||| || ||||| | | || || || |||||||| |||| Sbjct 22481 CTTG--CTAAT-CGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATG-T 22426 Query 145878 AGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTT 145936 ||| ||| ||||| || | || ||| | || | ||| || || ||||| | || | Sbjct 22425 AGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCT 22366 Query 145937 TAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGG 145996 | | |||||||| || | || || | | |||||||| || ||| || | Sbjct 22365 TGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAG 22306 Query 145997 CCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGA 146056 ||| || | |||||||| || || || | ||| || || | || |||| |||| Sbjct 22305 CCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGA 22246 Query 146057 GATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGG 146116 | |||| ||| || | | ||||| || || || ||||| | |||| ||| | Sbjct 22245 GGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACG 22186 Query 146117 TGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGT 146176 || ||||||||| ||||| ||||| || | ||||| ||||||| || || ||||| Sbjct 22185 TGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCG 22126 Query 146177 ACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| || | ||||| | | |||||| Sbjct 22125 GAGCCACGAGGAGCGAGTTGCGGATGCCGTG 22095 Score = 98.7 bits (108), Expect = 9e-16 Identities = 337/517 (65%), Gaps = 25/517 (5%) Strand=Plus/Minus Query 147070 TGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCGCC---CTGATCGACG 147126 ||||| ||||||| ||| ||||| | |||||| ||||| || || ||| || || Sbjct 21238 TGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACA 21179 Query 147127 TGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGAT------TTT 147180 | ||| || ||| ||||||||| | | ||||| | || ||| |||| || Sbjct 21178 TAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTC 21119 Query 147181 GTGGTGCCGTTGTAT-TGA-----GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCG 147234 ||| || | |||| || |||| || | | |||| ||| | || | ||||||| Sbjct 21118 GTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTAATGCCAATACCTCCG 21059 Query 147235 CCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCT 147294 || || || || | ||| ||| | | || | ||| ||||| || || ||| Sbjct 21058 GCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCG 20999 Query 147295 TCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAAC 147354 |||| ||| ||||||||||||| ||| || ||||| |||||| || ||| Sbjct 20998 TCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAG 20939 Query 147355 AGCGTGGGGCTGGCGTGCGT---GAACGTGCCCAGACTCATCAATTGATACGT-TTCAAT 147410 |||||||| | |||||||| |||| | | | ||| | | |||||| | || | Sbjct 20938 AGCGTGGGCGTCGCGTGCGTAAAGAACAT---CTGTGACATGAGCTCATACGTGTGCAGT 20882 Query 147411 GGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGG 147470 | ||| | | ||| | |||||| |||| || |||||||||| ||| |||||||| Sbjct 20881 GCCGC-CTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCATCTGCTGGGG 20823 Query 147471 TCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGTC-AGAGTTTTGAAAC 147529 || ||| | | | | || || || || || || | || || || ||||| | Sbjct 20822 GCGCTCCACGACCTTTCCGTTCACGCGGAAGAGGTAGCC-CCGCTCGAGCGTCTTGAAGC 20764 Query 147530 CAAAGTACTTGTAGTCGTAGTCCCTGTTGTGCTTGAT 147566 | ||||| | ||| || |||||| || ||| |||| Sbjct 20763 CGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGAT 20727 >seq1193 Length=7772 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 4000 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4059 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||| ||||||||| |||||||||||||| | || Sbjct 4060 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4119 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 4120 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 4179 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 4180 ATCTGCATG 4188 >seq448 Length=24230 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/169 (74%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| | | | | ||| | |||||||||| || || |||||||||||||| || Sbjct 1232 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTA 1174 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| | |||| ||||| ||| || |||| || ||||| | ||| | | | Sbjct 1173 CTCACTGGGTGCATCC-AAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 1115 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||||||||| |||||||||||||| ||||| || Sbjct 1114 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475474356211760