Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq174 197 2e-45 seq223 149 7e-31 seq448 105 8e-18 >seq174 Length=41958 Score = 197 bits (218), Expect = 2e-45 Identities = 1153/1818 (63%), Gaps = 68/1818 (4%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| ||||| ||||| || |||||| ||||| | ||||| || | || ||| Sbjct 22537 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTG 22478 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 || ||||| | || | ||||| |||||| ||| ||| | ||| Sbjct 22477 CTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCCA 22418 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || || |||| || ||| | | ||| || | || ||||| || ||||||||| Sbjct 22417 CGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 22358 Query 109594 TTCTTGATATCATCGGGAATG---TCCACGATGTTTTGAATAGAGCCACCAGCCTTCACC 109650 | ||||| | || |||||| | ||| || || | |||||||| | || Sbjct 22357 TCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAGA 22301 Query 109651 ATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGC 109710 || | | || ||| || ||||| || | || | || || | | || | | Sbjct 22300 ATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTAC 22241 Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 ||||| || | || |||||||| || ||| ||| ||| ||||| | |||||| Sbjct 22240 TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTAC 22181 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 || |||| ||||||||||||| | || || || || || || |||||||| |||||| Sbjct 22180 GGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCC 22121 Query 109831 ATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCA 109890 | ||| || ||| |||| || | | | | || ||| | || ||||||| Sbjct 22120 ACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCC 22061 Query 109891 TAACGACCACTAA-ATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGC 109949 | | | | | || | || | || |||||| || || | | ||||| Sbjct 22060 CA-CAAGCCCGAAGACGGGGTGACGCC---CCACATGTCGAACTGGAAGATACCCTTGCT 22005 Query 109950 AGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGC 110009 ||||| || |||| ||| ||||||||| ||| ||| ||| | ||| || | Sbjct 22004 GGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCGAGGT 21945 Query 110010 CTCTAGTGCCGCATGATACATAGTCTCAAAAAT----ATGAGCA-TTCATGAG---GCGA 110061 ||| | | || | || || ||||| || || ||| | |||| | | ||| Sbjct 21944 CTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGG 21885 Query 110062 GACTCTTCACAGTCGAAGGGA-AGACCACAAAGAATAAACACATCCGCTAGACCCTGAAC 110120 | |||| |||| | | || || | || |||| ||||||| |||||||| || Sbjct 21884 G-CTCT-------CGAACGCATAGTTCATGAGGA-TAAATGCATCCGCGAGACCCTGGAC 21834 Query 110121 ACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAA 110180 || | ||||| ||||| || |||||| || || || || |||||||| | Sbjct 21833 GCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTA 21774 Query 110181 GTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT 110240 |||| ||| |||||| || | ||| ||||| ||| || | || | || || Sbjct 21773 GTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTT 21714 Query 110241 GTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAG 110300 | ||| | |||| | |||| ||| | |||||||| || | |||||| || Sbjct 21713 CTGGTAGTTGAACACTCCATCCTCC------ACAAACTTGGGGAGGGCCACAGACGCCAG 21660 Query 110301 ATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAAGTTG 110358 |||||||| | ||| || | || ||||| |||| ||| || ||||||||| Sbjct 21659 GTTGCACACCGCCACCTCATCG--GGCGACGTGTACTCCATAATCTCGCAGCACAAGTTG 21602 Query 110359 ---GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTA 110415 || | | || || | ||||| ||| ||||| ||| |||| || ||||| Sbjct 21601 CTCGAGCGGATCGTG---CCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 21545 Query 110416 TAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCG 110475 || |||||| | || || || || |||| | | || ||||| ||| || | Sbjct 21544 TACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGCT 21487 Query 110476 GC--GGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA-AGT 110530 || ||| || || |||| ||| | || |||| ||||||||| ||||| ||| Sbjct 21486 GCTGGGCATTGATCGTCTTGCGC--GCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGT 21429 Query 110531 CCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 | || || || | || | ||| || | || || |||| | ||| ||||| ||| Sbjct 21428 C-TCGAACTCGTCGCCCCAGCAC-TCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGG 21371 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 ||| || || | | || || | |||||||||||| || || | ||||| || || Sbjct 21370 CTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAG 21311 Query 110650 AAAAGGTCACG-GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTC 110708 || ||||| || || | || || | | || ||||| ||| ||||||| || || Sbjct 21310 AAGAGGTCGCGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTC 21252 Query 110709 CATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA---CGACC 110765 | | || | |||||| || || || |||| |||| || || || || | || Sbjct 21251 GAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCC 21192 Query 110766 CGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATC 110825 |||||| |||||||| || ||| ||||||||||||| ||||| || || || || | Sbjct 21191 TCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTT 21132 Query 110826 GGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCAT 110885 |||| || || || || | || | || |||| || |||| ||| || || Sbjct 21131 GGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTAAT 21072 Query 110886 ACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 |||||||| || |||||||| || || |||| |||| || | ||||| || Sbjct 21071 GCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCC 21012 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 |||||||| || ||| |||| | || || || || |||| ||| ||||| ||||| Sbjct 21011 CTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGT 20952 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGT 111064 || || || ||||| || || ||||| || | || | || | || ||||| | | Sbjct 20951 GCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTCAT 20893 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 | |||| ||||| | | | |||| ||||||||| | || || ||||||| || Sbjct 20892 ACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCA 20833 Query 111125 TATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGA--AGGTAACTCTTCTCTAG 111182 | | || || || | | |||||| | ||||| || ||||| | | ||| || Sbjct 20832 TCTGCTGGGGGCGCTCCACGACCTTTCCGT--TCACGCGGAAGAGGTAGCCCCGCTCGAG 20775 Query 111183 GGTCTTGAGACCAAAGTA 111200 ||||||| || ||||| Sbjct 20774 CGTCTTGAAGCCGAAGTA 20757 >seq223 Length=35978 Score = 149 bits (164), Expect = 7e-31 Identities = 326/482 (68%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | |||||||||||| | ||||| Sbjct 31736 ATCTGCCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCGGCGCGGTTC 31677 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || || Sbjct 31676 GTACCAGCAAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCCACCAGC 31620 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||||| ||| | ||||||||| || ||| | | | | |||| ||||| Sbjct 31619 AGCTGGTTGAGCGTGTTTTCACGCTCGTCATTGCCGC-CGGAGAAGTTGCCCTT-GCTTC 31562 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| ||||| ||||||||||| || || || || ||| || || | Sbjct 31561 GTGCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAG 31502 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || |||||||||||| | || ||||| |||||||| || | ||||| Sbjct 31501 CCTCCTTGAACAGGTCACGTACACGCGAGGGACCCACACCAACGAACATTTCGATGAAGT 31442 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 || |||| | ||||| ||| || || | | ||| ||||| |||| || || Sbjct 31441 CTGAACCAGAGATGCTGAA-GAACGGCACGCTGGCCTCGCCAGCCGTGGCCTTCGCCAGC 31383 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 | || || |||||||| || | ||| |||| || ||||| ||||||||| || ||| Sbjct 31382 AACGTTTTGCCCGTACCGGGCGGGCCAACGAGCAGCGCGCCCTTGGGGATCTTCGCTCCA 31323 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || ||||||||||| | |||| | ||||| ||| Sbjct 31322 AGCTCCGTGAAGCGCTTTTGGTTGCGAAGGAAGTCCACGAACTCCATGATTTCCTTCTTT 31263 Query 11968 GC 11969 || Sbjct 31262 GC 31261 >seq448 Length=24230 Score = 105 bits (116), Expect = 8e-18 Identities = 349/529 (66%), Gaps = 19/529 (4%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| |||||||| || ||||| || | || ||||| | ||||| Sbjct 1066 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1125 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTG-ACCAACTTGTTTCAGAAGACG 119326 |||| || || || || ||| |||| ||| || ||| | | | ||| || || Sbjct 1126 CAGTCGAACGGGTTCTTCACGTTGTAGATCT-TGGATGCACCCAGTGAGTACAGCAGGCG 1184 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| || ||||||| || | | |||| | || ||||| || || || | || Sbjct 1185 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTC-CA 1243 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||| || | ||| | ||| | | ||| ||| ||||||| || |||||| | || Sbjct 1244 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1303 Query 119446 GAATA-GTTTCTGTCGATGGTTTGTTTCTCAA----GAGTTTAAACAACTCTACGGCAAA 119500 | | | ||| || | ||||| ||| |||| | | | | ||| || Sbjct 1304 GCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGT--ACATGAGGC-ACGCGAAG 1359 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 | | || | ||||| | ||||| ||||||||| || ||||| || |||||||| Sbjct 1360 TCCGTGTGCATGCCCT-CGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 1418 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 ||| || | ||||| ||||| ||||||| || || || || ||||| |||||||| Sbjct 1419 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 1478 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACT 119676 ||| |||||| || | |||||||| | ||| ||| || ||| |||||| Sbjct 1479 CACGGCGGCGAACGCCAGCAGACGCTCCG-GGTAGGACGAAACACGAGGGTCACACCACT 1537 Query 119677 TGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 |||| |||||| |||||| ||| | ||| |||| || | |||||| Sbjct 1538 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588943245572200