Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1193 114 3e-20 seq174 98.7 2e-15 >seq1193 Length=7772 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || ||||||||||| || |||||||| Sbjct 4000 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4059 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || ||||||||||| ||||| || ||||| |||||||| || ||| Sbjct 4060 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4119 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| || || || || || || | ||||| || |||| || || || || Sbjct 4120 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 4179 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 4180 ATCTGCAT 4187 >seq174 Length=41958 Score = 98.7 bits (108), Expect = 2e-15 Identities = 188/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 |||||||| | ||| ||||||| ||||||||| | ||| ||| || || | ||| Sbjct 21309 TTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCGAACGGCAAGTGG 21368 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 ||||||||||| |||||||| || || ||||| | || | || |||||||||| Sbjct 21369 AGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAG 21428 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGC---CAAAAAGGTCGTGAAGGCCCAA 160765 ||||| || || | ||||| || ||||| | || ||| | | || || ||||| Sbjct 21429 ACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGACGATC---AATGCCCAG 21485 Query 160766 GAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATAC 160825 | |||||| |||||| | ||| || | ||| ||| |||| || || ||| Sbjct 21486 CAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGCGTGCCGTTCATGCTGTAC 21545 Query 160826 AAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 ||||| || | |||||| |||||| ||||| Sbjct 21546 AAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAAC 21581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109418356428383