Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq174 125 6e-24 seq46 109 5e-19 seq1193 91.5 1e-13 >seq174 Length=41958 Score = 125 bits (138), Expect = 6e-24 Identities = 323/482 (67%), Gaps = 19/482 (4%) Strand=Plus/Minus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||||||||| | || ||| ||||||||||||| || | ||||| |||| | | | || Sbjct 21362 GCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTC 21303 Query 139449 GCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGTTT-CATGTTAAGGAAATCAAAAACG 139506 |||||| | | || || || || | | | || | ||||| || || ||| Sbjct 21302 GCGCGCGCGGTGCAGCT--CGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACG 21245 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGA 139563 ||||||||||| || ||||| |||||||| | | |||||| || ||||| ||| || Sbjct 21244 TCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGG 21185 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || || | || | | | |||||| || | || ||| || | ||| | | || | Sbjct 21184 TCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGAT 21125 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACAT--TGATGCCGA 139681 ||||| |||| |||||| ||||| || |||| || ||| ||| | ||||| | Sbjct 21124 CCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGT--TGTGCATGCTAATGCCAA 21067 Query 139682 TTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTT 139740 | || ||| | | ||||| || | |||| | || | | || ||||| || || Sbjct 21066 TACCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTGTCGTAAATGCCCTCA 21008 Query 139741 ATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCG 139800 || |||||||||||| | | ||| || || ||||| || ||||| | ||||||| Sbjct 21007 ATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCG 20948 Query 139801 GCTGCAAACAGAGTAGGACTCGCGTGCGT---GAACATTTGTTTCGACATCAATTCGTAC 139857 || ||| || || || |||||||||| |||||| ||| ||||| | || ||| Sbjct 20947 GCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT---GACATGAGCTCATAC 20891 Query 139858 GT 139859 || Sbjct 20890 GT 20889 >seq46 Length=70552 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 50385 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 50444 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || ||||| || Sbjct 50445 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 50504 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 50505 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 50564 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| |||| || ||| Sbjct 50565 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGC 50612 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 50613 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 50672 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || ||||| || Sbjct 50673 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 50732 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 50733 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 50792 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||||||||| |||| | ||||| || Sbjct 50793 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTTCGCGGCGG 50839 >seq1193 Length=7772 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || ||||| | || Sbjct 4187 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCC 4128 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| ||||| || || || || || Sbjct 4127 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 4068 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 4067 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 4033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449872580069720