Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq46 116 3e-21 seq163 102 7e-17 >seq46 Length=70552 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| ||||| || | |||||| || || || || |||||||||| Sbjct 50613 TGCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 50554 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| |||| || ||||| || |||||| | || |||||||| || || |||| Sbjct 50553 TCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCG 50494 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| || | |||| | | || | | ||| | | || | Sbjct 50493 GGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCA 50434 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || ||||| ||||| ||||| Sbjct 50433 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50385 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 27012 TAATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 || || || || ||||| | |||| ||||| || | |||||| || || || || ||| Sbjct 50848 TAGTTGTTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTG 50789 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 |||||||||| |||| |||| || ||||| || |||||| | || |||||||| || Sbjct 50788 TAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 50729 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || ||||| | ||||| || || ||| || | |||| | | || | | ||| | Sbjct 50728 TCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAA 50669 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || || || | |||||||||| || ||||| ||||| ||||| Sbjct 50668 GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 50613 >seq163 Length=42801 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| || | |||||| || || || || |||||||||| Sbjct 11672 TGCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 11731 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| ||||||| ||||| || || ||| |||| || ||||| || || |||| Sbjct 11732 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 11791 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || || || | |||| | | || | | ||| | | || | Sbjct 11792 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 11851 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | |||||||||| ||| ||||| ||||| ||||| Sbjct 11852 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 11900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424911359127288