Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq174 174 2e-38 seq448 109 6e-19 >seq174 Length=41958 Score = 174 bits (192), Expect = 2e-38 Identities = 1101/1748 (63%), Gaps = 62/1748 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||||||||| | |||||||| | ||||||| | | | Sbjct 20822 CCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATTCACAAGCAAGACATCCAGGCGGC 20881 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337 || | || || || ||||| || |||||| || ||||| || || || || Sbjct 20882 ACTGCACACGTATGAGCTCATGTCACA---GATGTTCTTTACGCACGCGACGCCCACGCT 20938 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 ||| || || || || || | || || |||| || ||||| | |||| |||| Sbjct 20939 CTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGTTTCCTGCTGGCCATGCAGGA 20998 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||||| || | || || || | || || | | |||| ||| ||||| |||||||| Sbjct 20999 CGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGC 21058 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || ||| || | | | |||| || | || || || || | Sbjct 21059 CGGAGGTATTGGCATTAGCATGCACAACATCCGCGCCACGAACAGCT-ACATCCGCGGCA 21117 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || ||| | || || || || ||||| | || || || | ||| || |||| Sbjct 21118 CGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCT 21177 Query 104577 ATGTAAATCA---AGCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 |||| | || || || || || || || |||| |||| || ||||| |||| Sbjct 21178 ATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGC 21237 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| || | | |||||||| ||| |||| ||||| || |||| | || | | Sbjct 21238 ACGCTGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAACGA-GCTGCACCGC 21296 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| ||||||| |||||| ||| | || ||||| ||||||||| | || || | | Sbjct 21297 GCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCG 21356 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | ||||| ||| || || || || | |||| || || |||| ||| ||| | ||| Sbjct 21357 AACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTGCTG-GGG 21415 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 || ||||| || | || ||| ||||||||| | || || || ||| |||| | Sbjct 21416 CGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGACGAT 21475 Query 104872 -----GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 ||||| || ||||| || || || | | || | ||||| || Sbjct 21476 CAATGCCCAGCAGC-----TGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGCGTG 21530 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||||| |||| ||| || || |||| | || | Sbjct 21531 CCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACG 21590 Query 104987 AT---CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 || | ||| ||| | || || || |||| | || |||||| | Sbjct 21591 ATCCGCTCGAG---CAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAGGTG 21647 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 || ||||| ||||| || || | || |||||||||| |||||| || || Sbjct 21648 GCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGA-----GGATGGAG-TG 21701 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 || | || | || || |||| || || || || ||| ||| | |||| || Sbjct 21702 TTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGAACAAGGTC 21761 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||||| || | |||||||| ||| || || || || || ||| | ||||| || Sbjct 21762 ATTGACGTCAACTACTACCCCGTGGAGGAGGCGCGCAAGTCCAACATGCGCCACCGCCCG 21821 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 105283 ||||| | || || |||||||||||||||| ||| || || | | || || || Sbjct 21822 GTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTATCCTCATGAACTATGCGTTCGAG 21881 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 | |||| ||| |||| | ||| || ||||| || || |||| || | Sbjct 21882 AGCCCGCAAGCCCGTGAACTCAACATGAACATCTTCGAGACGATCTACTACGCTTCTATG 21941 Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 ||| | ||| | || ||| || || || || || || |||| || || Sbjct 21942 GAGACCTCGATGGAGATCGCCAAGGAGCTGGGCCCGTACGAGACGTTCCAGGGATCGCCT 22001 Query 105404 GCTTCA-CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC----- 105455 || || |||||| ||| || || || |||||| || | ||| | |||| Sbjct 22002 GC--CAGCAAGGGTATCTTCCAGTTCGACATGTGG---GGCGTCACCCCGTCTTCGGGCT 22056 Query 105456 ACTACGACTGGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 | || |||| || |||||| ||||| |||| || | || | || ||| | Sbjct 22057 TGTGGGATTGGGCTGCGCTCAAGGAGAACGTGATCA---AGCACGGCATCCGCAACTCGC 22113 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 ||||| ||||||| ||||| || || || || || || || ||||| || ||||| | | Sbjct 22114 TCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGATTTTGGGCAACAATGAGTCCA 22173 Query 105573 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 105632 | || || |||||| ||||||| || | | || || || ||||| ||| | Sbjct 22174 TCGAGCCGTACACGTCGAACATGTACAACCGCCGCGTGCTGGCTGGTGAGTTCACGATCG 22233 Query 105633 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692 | |||||| | ||| || | || || | ||| | || ||||| | || || Sbjct 22234 TGAACAAGTACCTCATGAAGGAGCTGATCGAGCTGGGCATCTGGACGCCTGAGGTGCGCA 22293 Query 105693 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGA---TATTCCAAATGAAA 105749 | | || || | ||||| ||| | || || ||| | ||||| | | Sbjct 22294 ACCAGATTCTGGCTGACGGTGGCTCCGTGCAGAA---GGTGAAATCCATTCCGGACCAGG 22350 Query 105750 TTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCG 105809 | ||| || |||| || || ||||| |||||| ||||| || | ||| || | | Sbjct 22351 TCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCCGTGTTGGACCTGTCGG 22410 Query 105810 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAA 105869 | || ||||| || |||| || || || |||| | ||| | || | Sbjct 22411 CGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCCGACCCGA 22470 Query 105870 CGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGA 105929 |||| |||||| | || |||||| | ||| ||||||||||| ||||| ||||| | Sbjct 22471 CGATTAGCAAGCTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCA 22530 Query 105930 TGTATTAC 105937 |||| ||| Sbjct 22531 TGTACTAC 22538 >seq448 Length=24230 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 1481 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 1422 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 1421 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 1372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583228363408760