Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933335.1_202017-01-04] 4,449 sequences; 38,872,710 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq455 185 6e-42 >seq455 Length=24128 Score = 185 bits (204), Expect = 6e-42 Identities = 442/662 (67%), Gaps = 11/662 (2%) Strand=Plus/Plus Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201 || || || ||||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 22096 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 22155 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261 |||| | ||| | || || |||| | ||| || || | |||||| || |||||| Sbjct 22156 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 22215 Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA 27321 || || || || || |||||||| |||| | |||||| | ||||||||| | ||| || Sbjct 22216 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 22275 Query 27322 TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 || ||||| || || || | ||||||||| || || ||||| | || || Sbjct 22276 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 22335 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 27438 |||||||| || ||| | ||| || | ||| ||||| | | | || | Sbjct 22336 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 22395 Query 27439 TCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGT 27497 ||| | ||| |||| ||||| ||| || | |||||| | ||||||||| Sbjct 22396 ATCACCTCA----GCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGCGTGCATGTCCGT 22451 Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 |||| || || ||||| | ||| ||||| ||||| || ||||| ||||| ||| |||| Sbjct 22452 GTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTC 22511 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | || || || | |||||||| | |||| ||| || || |||||||||| | Sbjct 22512 GCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTG 22571 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 27677 | |||||| ||| | | | | ||| || || | ||||||||||||||| Sbjct 22572 AATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTC 22631 Query 27678 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA-ACTGTCCCT-T 27734 |||| | ||| | ||| || || | |||||||||||| || ||||| || || || | Sbjct 22632 CTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTCTCTCT 22691 Query 27735 GAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTCC 27794 || | | ||| ||| | |||||||| ||||| || |||||||| | |||||| Sbjct 22692 CAGACTGAACCGCATCTGTGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTCC 22751 Query 27795 CC 27796 || Sbjct 22752 CC 22753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369487164511319