Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq146 114 1e-20 seq55 114 1e-20 seq734 82.4 6e-11 seq44 82.4 6e-11 >seq146 Length=48309 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || ||||| | ||||||| |||| || |||||||| || ||||| ||||| Sbjct 15075 GTTACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC 15134 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || || |||| || ||||| ||||| || |||| || | ||||||||| Sbjct 15135 GCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGG 15194 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| || || || ||||| | | ||| | || ||||| Sbjct 15195 CGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 15254 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | |||| ||| || |||||||| || || || || ||||| || ||||| Sbjct 15255 CACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15305 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| || |||||||| || ||||| ||||| | Sbjct 15307 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15366 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || ||||| ||||| || |||| || | ||||||||| || Sbjct 15367 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15426 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| || || || ||||| | | ||| | || |||||| Sbjct 15427 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 15486 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || |||||||| || || || || ||||| || ||||| Sbjct 15487 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15533 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| || || ||||| || ||||| ||||| | Sbjct 15535 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTC 15594 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || ||||| ||||| || |||| || | ||||||||| || Sbjct 15595 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15654 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGA--CAGTATCACCGGGCTCCG 21126 | |||||||||||| || || || ||||| | | ||| ||| | || |||||| Sbjct 15655 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGAC--GGCTCCA 15712 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || |||||||| || || || || || || || ||||| Sbjct 15713 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 15761 >seq55 Length=70247 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | ||||||| |||| || |||||||| || ||||| ||||| Sbjct 19412 GTTTCCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTC 19471 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || | ||||||||||||| ||||| || | || || | ||||||||| Sbjct 19472 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGG 19531 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||| |||||||| ||| || || ||||| | | ||| | || ||||| Sbjct 19532 CGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTC 19591 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | |||| || ||||||||||| || ||||| || || || || ||||| Sbjct 19592 CACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19642 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| || |||||||| || ||||| ||||| | Sbjct 19644 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19703 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| || | || || | ||||||||| || Sbjct 19704 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19763 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || || ||||| | | ||| | || |||||| Sbjct 19764 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 19823 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| || ||||||||||| || ||||| || || || || ||||| || Sbjct 19824 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 19873 >seq734 Length=14276 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||||| || || || ||||||| ||||| ||||| || | | Sbjct 3775 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3716 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | ||||||||| || | |||||||||||| ||| || || || || | | Sbjct 3715 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 3656 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 | | | || ||||| |||| || ||||||||||| || | || || |||| Sbjct 3655 CAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 3596 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 3595 AGATCTGCAT 3586 >seq44 Length=75120 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||| |||||| |||||||| ||||||| Sbjct 35360 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 35419 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 || || || ||||||||||||| ||||| || | || || | ||||||||| Sbjct 35420 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 35472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422235398436500