Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq360 188 1e-42 seq3543 187 5e-42 seq270 109 1e-18 >seq360 Length=27682 Score = 188 bits (208), Expect = 1e-42 Identities = 454/674 (67%), Gaps = 30/674 (4%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||| | || |||||||||||||||||||| || | || |||| ||||| || | | Sbjct 13923 GTGGGTACCCTTTCGGGTGGTTGGAAGATGAAACTTGAGCTTGCTCGTGCCATGCTGCAG 13864 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || |||| || ||||||||||| || ||||| |||| || ||||| ||| Sbjct 13863 AAGGCAGACATCCTGCTCCTTGATGAGCCGACGAACCATTTGGATGTCAAGAACGTCGCC 13804 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| || || ||| ||| || | | |||| || || |||||| Sbjct 13803 TGGCTGGAGAACTACCTGACGAGCCTGCCGAACGTGACGAGCATCATGGTGTCGCACGAC 13744 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA---GCAAAATCTGAAG 279932 ||||||||||| || | || || | |||||||||||| || || || |||||| Sbjct 13743 TCTGGCTTCCTCGACACTGTCTGTACCAACATCATTCACTACGAGACGCGTAAGCTGAAG 13684 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 ||| |||| |||||||| ||||||||||||| || |||||||| ||| Sbjct 13683 ATCTACAAG------GGCAACCTTTCTGCTTTCGTGGAGCAGAAGCCTGAGGCCAAGGCC 13630 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| || ||| || | || || |||| ||||| ||||| || || || | Sbjct 13629 TACTACGAGCTGGAGTCTGACAACGTGAAGTTCACGTTCCCGGAGCCCGGTTTCCTCGCC 13570 Query 280053 GGCATC-ACATCAAAGG---ATCGCGCAATC--ATGAAGCTCCGTGGCGTCTCCTTTGCT 280106 | |||| | | ||| || | | || || ||| | | || ||| | | | Sbjct 13569 GACATCAAGAACAAGGGTAAACCCATCATTCGTCTGACGAACTGT-TCGTACCAGTACCC 13511 Query 280107 T---ATCCCAATGGCCCCAACATCTTCAGCAGT--GTCAACTCGCAGGTTTCTATGAACT 280161 | | ||| | | || ||| || || | | || || | ||| | || | Sbjct 13510 TGGCACCCCGAAG--CCGTCGATCAACAACATTTCGGTGACGTGC-GCTTTGT-CGAGC- 13456 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 || || | || |||||||||| ||||| || ||||| ||| | |||||| | |||| Sbjct 13455 --CGTATCGCCGTGCTTGGACCCAACGGTGCCGGAAAGTCGACCATGATCAAAATGCTGA 13398 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 | || ||| || |||| ||| || | || |||||||| || |||||| | || Sbjct 13397 CGGGTGAGGTTGAGCCCAC-GAGTGGCCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCC 13339 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 || || || |||||||||||||||||||| ||| ||||| ||| ||| | ||||| Sbjct 13338 TATGTGGCCCAGCACGCTTTCCACCACATTGAGTCTCACCTCGACGAGACCGCGAACCAG 13279 Query 280341 TACATTCAGTGGCG 280354 ||||| |||||||| Sbjct 13278 TACATCCAGTGGCG 13265 Score = 114 bits (126), Expect = 3e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| ||||| |||| || |||||||| || || ||||| | ||||||||| ||| | Sbjct 14266 GGACCTGTGCAACTGCGAATTCTCGCTTGCCTACGGTGGTATGATTCTGCTGAACAACGC 14207 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 |||||| | | ||||||||| |||| || ||||| ||| ||||| || ||||| Sbjct 14206 CCGCCTTCGCTTGAAGCGTGGCCACCGTTACGGTCTGTGCGGCCCCAACGGTTGTGGTAA 14147 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGA 279529 | ||||| |||||||| || | ||||||||||| || || || || | | || || Sbjct 14146 GTCGACTCTGATGCGCGCTATCTCCAACGGTCAGCTCGAGGGCTTCCCCAGCCGCTCCGA 14087 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGAC 279557 | | | ||| |||| || |||||| || Sbjct 14086 GCTGAAGACTGTGTTCGTTGAGCACAAC 14059 >seq3543 Length=1457 Score = 187 bits (206), Expect = 5e-42 Identities = 572/861 (66%), Gaps = 29/861 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||| ||||||| ||||| | Sbjct 1198 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTTCTTC 1139 Query 251623 GCATTGTACTGCTTGGGATGG-CCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCA 251680 | ||||| ||||| ||| || |||| ||| | | |||||| ||||| ||||| | Sbjct 1138 ACGTTGTAGATCTTGG-ATGCACCCAGTGAGTAC-AGCAGGCGGTCGGCCACGAACTCGA 1081 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGA---ATTGCCTCA 251736 ||||| | ||| || ||||||||||||| |||| | || ||| | | |||| Sbjct 1080 TGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCTCA 1021 Query 251737 CAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGA 251796 | ||| || | || | | || || || ||| || || | ||| | | Sbjct 1020 C----GAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTGCACGCGGCTCTCC 965 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCT 251854 | |||||||||| ||| ||| ||||||| ||| | ||| || | || ||||| |||| Sbjct 964 GGCAGCTTGTTCACCAACTTCGAGTACATGAGGCACGCGAAGTCCGT--GTGCATGCCCT 907 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 |||| || ||||||| |||||| || | | ||| |||||||| | || || ||| ||| Sbjct 906 CGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTGA 847 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | ||| ||||| || ||||| | | ||||| || | | || | Sbjct 846 GCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCCA 787 Query 251975 CAAGGCGCTCAGCAAACGAC--TTGTCCTGCGACA-AGAACTTCTGTGCCCATGCTGCCT 252031 || ||||| | | ||| | | | || | |||| | ||||| |||| Sbjct 786 GCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACACCACTTGAGCGCCCAGCGGGCCT 727 Query 252032 TCTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCATC 252089 |||| |||| | | ||||| || ||||| ||| | || || | ||| ||| | | Sbjct 726 TCTTCTCCACGCAC-GGGATCGTCTCGATGGCA-CGCAGCAAGTGATCCTTCTCCACGGC 669 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||||| |||| || || | ||| || ||||||| |||||| |||||| ||| || Sbjct 668 GTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATGGC 609 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 |||||| | | ||||| || || || | || || || ||||| | Sbjct 608 GATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTGCACCTCATTGCTGAAGTTCAT 549 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGAT 252269 || | |||||| |||| ||||| |||||| | || ||||| | || | | |||||| Sbjct 548 CGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAATGCTAGCACGTGCTTGAT 489 Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG 252329 |||||| ||||| | ||| | || || | |||||| | ||| || ||| Sbjct 488 GAAGTGGCGCTCGTTGTCCGTCAG---GTTCCCCCAGTCCTTCAGGTCGTGCACCAGGTC 432 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAG 252388 | || || |||||||||| | | | |||||||||||||||| ||| |||| || Sbjct 431 CAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATCTGC-CACACGTCGT 373 Query 252389 GGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 372 GCTCCTGGATCGGGAACAGCA 352 >seq270 Length=32853 Score = 109 bits (120), Expect = 1e-18 Identities = 238/355 (67%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 ||||||| || ||||| |||| ||||| || || |||| ||||||||||| |||| Sbjct 23318 TTAAGGTGGCGCAGTTGGCTGGCTATGTTTCGGAGCACTCTGCGTACCATCACGGAGAGC 23259 Query 218714 AGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGA 218773 ||||| |||| || || || |||||| ||||| | || || ||||||||||| Sbjct 23258 AGAGTTTGCAAGGCTGTATCGTGAACATGGCGCAGGATTTCGTTGGAAGTAACAACATCC 23199 Query 218774 ACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTT 218833 || | ||| || | ||||||||| ||| | ||||| |||| || ||||| ||| Sbjct 23198 ACCTTCTGTCTCCTATCGGTCAGTTCGGTACGCGTCTGATGGGCGGCAAGGACTCTGCCA 23139 Query 218834 CTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAAT---CAGG 218890 || | ||||| || || || ||| || | ||||| | | | | || | || Sbjct 23138 GCGCTCGTTATATTTTCACCAACTTGGAGCAGCTCACGCGACTTATCTACGATCCGCTGG 23079 Query 218891 CCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGT 218950 | | |||||| || |||||| | || || || || || || || ||||| |||| Sbjct 23078 ACAACGATGTG---CTGAAGTATTTGGATGAAGACGGCCAGTCTATCGAACCCGAATGGT 23022 Query 218951 ATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 | | || || ||| | | ||||| || || |||||||||| ||||| Sbjct 23021 ACATCCCGATCATCCCGATGGTTCTCGTGAACGGCAGTGATGGTATCGGAACAGG 22967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027775892639625