Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq37 223 6e-53 seq3543 217 3e-51 seq360 174 3e-38 seq55 154 3e-32 seq146 140 6e-28 seq734 129 1e-24 seq199 111 3e-19 seq1486 102 2e-16 seq188 86.0 1e-11 >seq37 Length=82607 Score = 223 bits (246), Expect = 6e-53 Identities = 388/554 (70%), Gaps = 14/554 (3%) Strand=Plus/Minus Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306 || ||||| |||||| ||| |||||||| || || |||||||| || ||||| || Sbjct 40984 TGAAGCATGCGCCACATGCATTCCACATAGTCACGGGCGTGGCCCCAGTCACGCTTGGCA 40925 Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGC--AAGACCGC 268364 |||| ||| || | || ||||| ||| | || |||| ||| | ||||| Sbjct 40924 TCCAGGTTGCCCACAAAGAGGCACCTCTCAATCCCCG----CACGAATGCGCACCACCGC 40869 Query 268365 --GAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAG 268422 | ||||| || ||||||||||| || || ||| | || |||||||||||||| || Sbjct 40868 ACGCGTGATCTTGCGGGTCACGAAGGTTGGTCCGCGTCGCGGACTCTCGTGGTTGAACAG 40809 Query 268423 GATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATG 268481 || ||||| ||| ||| |||| || || || || |||| |||||| || |||| | | Sbjct 40808 AATCCCGTT-CACGGCGTACATCCCGTAGGCTTCTCGGTGGTTCACCACACTCCAAAACG 40750 Query 268482 CAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATC-TTTTGA 268540 ||||| ||| || || ||||||| || || || ||||| ||||| || || | || Sbjct 40749 CAAACTGCTTCGCTACACCGTACGGTGAGCGCGGGTGGAACGGCGT-GTCTTCATCCTGT 40691 Query 268541 GGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTT 268600 ||| | || | |||||||| || | ||| || || |||||||||||| || | Sbjct 40690 GGGGTGGCTTGCACTTTGCCGAATAATTCGCTCGTAGACGCTTGGTAGAACCGCGTCGAA 40631 Query 268601 TTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACG 268660 | ||||| || || | || | | |||| ||| || | ||||| | || ||| Sbjct 40630 TGCTCGAGCCCACACGTGCGCAAACACGTCAGCAGACGCAGCGCTCCCAGCGCGTCGACG 40571 Query 268661 TCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTA 268720 || || || ||||| | |||||| || || || | |||||| | ||||||||||| Sbjct 40570 TCTGCCGTGTACTCGGCCATCTCAAACGAGACTTTAACATGGGACATCGCGCCCAGGTTG 40511 Query 268721 TAAACCTCATCCGGTTTGACCTGCTGCACGATCT-TCACGAGGTTCGTTGAGTCGGTGAG 268779 || || ||||| |||| ||| || |||||||| ||| || |||| | ||| ||||| Sbjct 40510 TACACTTCATCGGGTTGGACGCGCGCCACGATCTGGCAC-AGATTCGACGCGTCCGTGAG 40452 Query 268780 GTCTCCGTAGTGCA 268793 |||||||||||||| Sbjct 40451 GTCTCCGTAGTGCA 40438 >seq3543 Length=1457 Score = 217 bits (240), Expect = 3e-51 Identities = 618/938 (66%), Gaps = 29/938 (3%) Strand=Plus/Minus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATGACGCCC------GC 9946 ||| ||||||||||| | | ||||| | ||| ||||| | ||| ||| || Sbjct 1280 TTAAAAGTCTGCGTCCAGAGTGAACACCTGGTCCTCGGC---CGCGACACCCACACCAGC 1224 Query 9947 CTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAG 10006 ||| |||||| || || |||||||||||||| |||||||| || || || | Sbjct 1223 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 1164 Query 10007 CTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAA 10066 ||||| |||| || ||||||| || | ||||| ||| |||| | Sbjct 1163 ATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAG 1104 Query 10067 AATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCAT 10126 | |||||| |||||||||||||||||||||| ||| || | ||||||||||| |||| Sbjct 1103 CAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCA- 1045 Query 10127 GCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGA 10185 || || ||||| | ||||| | ||| || | || | | || || || |||| Sbjct 1044 GCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGA 985 Query 10186 TGCTCTTTACCACG--TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCC 10243 | | | | | || || || |||||||||| | | |||||| |||| ||| | Sbjct 984 T-CGCGTGCACGCGGCTCTCCGG-CAGCTTGTTCACCAACTTCGAGTACATGAGGCACGC 927 Query 10244 AAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGG 10303 || | | ||| | ||||||||| |||||||||| |||||| || || | |||||| || Sbjct 926 GAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGG 867 Query 10304 CATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACC 10363 |||||| || || || |||||||| |||| |||||| || || ||||| | || || Sbjct 866 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCC 807 Query 10364 CTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCGCGA---AAAGTA 10420 ||||||| | | || | || ||||| | | |||| | || | | | | Sbjct 806 CTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACACCA 747 Query 10421 TTTCGAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGC---CTCGA 10476 || ||| ||||| |||||||| ||||| |||||||||||||| || | | Sbjct 746 CTT-GAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCA 688 Query 10477 AGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCT 10536 || | | || | ||| |||||| || | || | ||||| ||||| || Sbjct 687 AGTGATCCTTCTCCACGG---CGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCT 631 Query 10537 CGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCG 10596 | ||||| | |||| || |||| | ||||||| || ||| || | Sbjct 630 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTT 571 Query 10597 TGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAA 10656 || || | | ||||| | ||||||||| |||| ||||| |||||| | || | Sbjct 570 GCACCTCATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 511 Query 10657 AGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGT 10716 |||| | || | ||||||||||||||||||||| | || |||| || | ||||| Sbjct 510 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTT---CCCCCAGT 454 Query 10717 CTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCT 10776 | || || || || | | |||||| | |||||||| | || | ||||||| Sbjct 453 CCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCT 394 Query 10777 TGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 |||||||||| | | |||| | | | |||| |||||| Sbjct 393 TGTACATCTGCCACACGTCGTGCTCCTGGATCGGGAAC 356 >seq360 Length=27682 Score = 174 bits (192), Expect = 3e-38 Identities = 441/664 (66%), Gaps = 24/664 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||| | |||| ||| ||||| |||||| ||||||||||| Sbjct 13265 CGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAGGTGAGACTCAATGTGGTGGAAAGCG 13324 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 |||||||| || || || | |||||| || ||||||||||| ||| | || || Sbjct 13325 TGCTGGGCCACATAGGCGAAACGCATGGAAGGGTGCTTCCACACCTGGCCACTCGTGGGC 13384 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | ||||| | || | ||| || ||||| ||||| |||| | Sbjct 13385 TCAACCTCACCCGTCAGCATTTTGATCATGGTCGACTTTCCGGCACCGTTGGGTCCAAGC 13444 Query 225161 ACGCCAATCCGGGATGACATTGCA-ACCTG--CGAGTTCACGTTGCT-GAAGATCTCAGG 225216 ||| | || ||| |||| || || | ||| | |||| | || | || || Sbjct 13445 ACGGCGATACGGCTCGACAAAGCGCACGTCACCGAAATGTTGTTGATCGACGGCTTCGGG 13504 Query 225217 G--CCAGTTT---GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 | |||| | |||| | | || | ||| | |||||| ||||| Sbjct 13505 GTGCCAGGGTACTGGTACGAACAGTTCGTCAGACGAA------TGATGGGTTTACCCTTG 13558 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC---C 225328 | || | | ||||| |||||||| |||||| |||| ||| ||| | Sbjct 13559 TTCTTGATGTCGGCGAGGAAACCGGGCTCCGGGAACGTGAACTT---CACGTTGTCAGAC 13615 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388 | ||| |||||||| | ||||| || || ||||||||||||| ||||| || Sbjct 13616 TCCAGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCCACGAAAGCAGAAAGGTTGCCC 13675 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 || || | ||||| | | ||||||| |||| || | || || | ||| Sbjct 13676 TTGTAGATCTTCAGCTTACG---CGTCTCGTAGTGAATGATGTTGGTACAGACAGTGTCG 13732 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||||||||||||||| ||||| |||||| || |||||||| ||||| | | |||| Sbjct 13733 AGGAAGCCAGAGTCGTGCGACACCATGATGCTCGTCACGTTCGGCAGGCTCGTCAGGTAG 13792 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | ||||| || ||||| |||| |||| ||||| || || || || || |||||| Sbjct 13793 TTCTCCAGCCAGGCGACGTTCTTGACATCCAAATGGTTCGTCGGCTCATCAAGGAGCAGG 13852 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || | || ||||| || | || || ||||| ||||| || || || Sbjct 13853 ATGTCTGCCTTCTGCAGCATGGCACGAGCAAGCTCAAGTTTCATCTTCCAACCACCCGAA 13912 Query 225629 AGGG 225632 |||| Sbjct 13913 AGGG 13916 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||| | ||| | || ||||| ||| ||| || | ||| || | ||| || ||||| Sbjct 12721 GTGGGTAATCATGACCACACCACCGTTGAAGTCCTTGATGGCCGAAGCAAGAGCACCAAG 12780 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 ||| |||||||| ||| ||||||| |||||||| || | | | ||| ||| | |||| Sbjct 12781 CGAGTCGCGGTCGAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTGCGGGTTCAGCCA 12840 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || ||| || || | ||| | ||||||||||||||| ||||| || || || || ||||| Sbjct 12841 CATGGCAGCTCCCAGCACAACCTTCACCTTCTGACCACCAGACAGACCACGCATGCGCGA 12900 Query 224629 GTGAGT 224634 ||| || Sbjct 12901 GTGCGT 12906 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 225778 GTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATC-GGGGAAGCCCTCCAGCTGGC 225836 || ||| || ||| |||| ||| |||| || || | |||||||||||| ||||| | Sbjct 14059 GTTGTGCTCAACGAACACAGTCTTCAGCTCGGA-GCGGCTGGGGAAGCCCTCGAGCTGAC 14117 Query 225837 CATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGT 225896 | || | || || || | ||| || ||| || |||||||| ||| || |||| Sbjct 14118 CGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGCACAGACCGT 14177 Query 225897 AATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGG 225956 || | | || ||||| | | ||||| | | |||||| || ||| | ||||| |||| Sbjct 14178 AACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGCAGAATCATACCACCGTAGG 14237 Query 225957 CAAGGGAGAACTCGCAATCGCACAGGTCC 225985 |||| ||||| ||||| | |||||||||| Sbjct 14238 CAAGCGAGAATTCGCAGTTGCACAGGTCC 14266 Score = 84.2 bits (92), Expect = 4e-11 Identities = 214/323 (66%), Gaps = 2/323 (1%) Strand=Plus/Plus Query 226337 GCGTCCGCGGGATCCTCCACGAGGCGCGACATGTTGTTGATAATCACACAGGTCTTGCGC 226396 || || || || || |||| ||| ||||||||| || || ||| | || ||| Sbjct 14708 GCCTCAGCAGGGTCGTCCATGAGCTTGCACATGTTGTCAATGATGACAGCAGCCTGACGC 14767 Query 226397 TTCACCACGGTGGTGCGCTCCGCGAGACCGCGGCAGATGAGGGGCACGAGCACGGCAAGG 226456 ||||| || ||| ||| || | | | || | || ||| | | | |||||| Sbjct 14768 TTCACGGACGTCTTGCCCTCAGCCAAAGCACGCTTCAGCAGCGGCTCCATGATGGCAAGA 14827 Query 226457 GTCCGGGCATCCACGGTCTGGACAAAAGTGGTCGCGGACAGCTTGTGGACGCACTCGGGG 226516 | |||| |||||||||| || || ||||||| || || |||||| |||||| || Sbjct 14828 GCGGGGGCCTCCACGGTCTTAACGAACGTGGTCGAGGCCAACTTGTGCGTGCACTCCGGC 14887 Query 226517 ACCTGGCTCGTGTCGGAAATAGA-CTCGATGAGGTGGGGCACAAAGGGGTCAATGTCCTT 226575 || | | | || || | | | ||| | ||| || | ||||| || || ||| | Sbjct 14888 ACTTCCGTGGGGTTGGCCAGACAGCTC-ACCAGGGCAGGGATGAAGGGTTCGATATCCAT 14946 Query 226576 GTTGCCAATGGACTTGCAGCACATGACCAGAGTGTCCTTGGCAGCATCCTTCACAGCCTT 226635 |||||| | | |||||| | || || ||||||||||| ||| |||| || |||| Sbjct 14947 GTTGCCCACGACGTTGCAGACCTTGGTCATGGTGTCCTTGGCGGCAACCTTGACCTCCTT 15006 Query 226636 GCGGATGTCAACCATGCAGTCCG 226658 |||| | || ||||||||||| Sbjct 15007 GCGGGTATCCCACATGCAGTCCG 15029 >seq55 Length=70247 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 ||||| |||||||| |||| |||||||| || || ||||| || |||||||| || ||| Sbjct 19413 TTTCCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCG 19472 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || | || || || | |||||| |||||||| || || | || |||||||| Sbjct 19473 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGC 19532 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || ||||| ||||||||||| || || ||| ||| ||||||| ||| | | || Sbjct 19533 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCC 19592 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| |||||||| || ||||| | ||||| ||||| |||||||| Sbjct 19593 ACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19642 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| ||||| ||||| || |||||||| || ||| Sbjct 19644 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19703 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 19704 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19763 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || ||| ||| ||||||| ||| | | || || Sbjct 19764 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 19823 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || ||||| | ||||| ||||| |||||||| Sbjct 19824 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19870 >seq146 Length=48309 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| ||||| || || || |||||||| || ||| Sbjct 15535 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTC 15594 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || ||||| || || Sbjct 15595 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15654 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| ||||| || ||| ||| ||||| | ||||| | || || Sbjct 15655 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACG 15714 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || ||||| | ||||| ||||| |||||||| Sbjct 15715 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 15761 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| || || || || || |||| |||| ||| ||||| ||||| || |||||||| || Sbjct 15072 TTAGTTACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTA 15131 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || || | || ||||| | |||||| || ||||| || || | || ||||| Sbjct 15132 GTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTC 15191 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || |||||||||||||| ||||| || ||| ||| ||||| | ||| | | Sbjct 15192 AGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGG 15251 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||||||||| || || ||||| | ||||| || || |||||||| Sbjct 15252 CTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15305 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| ||||| ||||| || |||||||| || ||| Sbjct 15307 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15366 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || ||||| || || Sbjct 15367 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15426 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| ||||| || ||| ||| ||||| | ||| | | || || Sbjct 15427 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 15486 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || ||||| | ||||| || || |||||||| Sbjct 15487 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15533 >seq734 Length=14276 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || ||||| || | || || || | |||||| |||||||| || Sbjct 3773 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3714 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || ||||||||||||||||| || || || |||||| || Sbjct 3713 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3654 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||| | | ||||| |||| |||||||| || ||||| |||||||| || || Sbjct 3653 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 3594 Query 68454 ATCTGCATTAT 68464 |||||||| || Sbjct 3593 ATCTGCATGAT 3583 >seq199 Length=39908 Score = 111 bits (122), Expect = 3e-19 Identities = 254/377 (67%), Gaps = 18/377 (5%) Strand=Plus/Plus Query 173102 ATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCG 173161 || ||||| || ||||||||||| || ||| | || ||||||||||||||||| |||||| Sbjct 34298 ATCGACACCATCATGCACTTTGCAGCCCAGTCTCACGTGGACAACTCGTTCGGGAACTCG 34357 Query 173162 CTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTC 173221 | | || | || || ||| | | || |||||||| || ||||| |||||||| Sbjct 34358 ATCGAGTTCAGCAAGACCAATATATTGGGCACCCACGTGCTGCTGGAGGCTGCGAGGCTG 34417 Query 173222 TATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACG-----GCGAGA 173276 || || || || |||||||| ||||| || ||||| || |||| | |||| Sbjct 34418 CAT---GGAGTGAAGAGGTTCATCCATGTGAGCACGGACGAGGTGTACGGAGAAGGGAGA 34474 Query 173277 GCAGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCAT 173336 | | || || | || | || || || || || ||||| || ||||| | Sbjct 34475 CCCGACTCCGCTCCGATGACG-----GAAGATCA--TGT-GCTGGAGCCGACGAACCCGT 34526 Query 173337 ATGCAGCAGCCAAGGCTGGTGCCGAAATGAT-GGCACGTGCATATCACACATCGTACAAG 173395 | || || | || || || ||||| | | | || | | || ||| |||| | Sbjct 34527 ACGCGGCCACGAAAGCGGGGGCCGAGTTCCTCGTCAAG-ACGTACCACCGCTCGTTCGGC 34585 Query 173396 CTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAAAA 173455 || || |||| | |||||| |||| || ||||| ||||||||||||| ||| || || Sbjct 34586 CTGCCGACCATCATCACGCGCAGCAATAACGTGTACGGCCCGCATCAGTACCCGGAGAAG 34645 Query 173456 ATGATCCCAAAATTTAT 173472 | ||||| || |||| Sbjct 34646 CTCATCCCCAAGGTTAT 34662 >seq1486 Length=5311 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 || |||||||| | ||||||| ||| ||||||||||||||||||| | | | ||| Sbjct 3705 AGAGCGCCAAGTGCGGCGCGGTCCAGGTAGTTCGTCGGCTCATCCAGCACCAGCAGGTGC 3646 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 |||| | ||||| || ||| | | || ||||||||||||||||| || || |||||| Sbjct 3645 GGGCGGTTCCACATCGCAGCAGCGATGACAAGCTTCACCTTCTGACCACCCGACAGGCCG 3586 Query 224618 CGGATC 224623 |||||| Sbjct 3585 CGGATC 3580 >seq188 Length=41916 Score = 86.0 bits (94), Expect = 1e-11 Identities = 345/531 (65%), Gaps = 23/531 (4%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCG--GCACAAAGATTGCT-G 31757 ||||||||| || || | || ||||| || | ||||||| |||||| ||||| | Sbjct 20262 CACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG--TTGCTCG 20319 Query 31758 CCCGTGATGGTGCCGGCATTGGACTGCATGTTC---TTCACGTTCACGCTGTCCTTGTTG 31814 || ||| |||||| || |||| |||| || ||| | |||||||| Sbjct 20320 AGCG-GATCGTGCCGAGGTT---CTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAC 20375 Query 31815 AGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGC 31874 |||| | | |||| |||||||| ||||||| | | || || ||| | | | Sbjct 20376 AGCATGAACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGG 20435 Query 31875 GCTTTGA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTA 31933 || |||| || ||| | ||| |||||||| |||||| ||||| |||| | Sbjct 20436 GCATTGATCGTCTTGCG-CGCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGTCTCGAA 20494 Query 31934 CTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGC 31993 ||| | ||| || ||| || ||||| ||| |||||| ||| || ||| Sbjct 20495 CTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACTT 20554 Query 31994 GACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATT 32053 | | | || || || |||||||||||||| ||| | ||||| ||||| || || | Sbjct 20555 GCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTC 20614 Query 32054 CCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTC 32113 | ||||| || ||| | || ||||| || ||| |||||| || | | ||| Sbjct 20615 GCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTC 20674 Query 32114 GGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTT 32170 || ||| ||||| ||||| | |||||| || || ||||| || || ||||||| Sbjct 20675 GGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTC 20734 Query 32171 TGCGTATGCAGATGTCGTGTC---GTACACCTTCAGCATGGGTACGATGCC 32218 | || || | | |||||| | | ||| |||||||||| | ||| || Sbjct 20735 CACATA-GCGG--GCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCC 20782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921569118705000