Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3543 410 2e-109 seq188 403 3e-107 >seq3543 Length=1457 Score = 410 bits (454), Expect = 2e-109 Identities = 616/865 (71%), Gaps = 15/865 (2%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||| | ||| ||||||||||||||| || || |||||| || Sbjct 362 GATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGC 421 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | ||||||| | ||| | | ||||| | ||| | || ||||| Sbjct 422 CGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAACCTGACGGACAACGAGCG 481 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| |||| || | || || |||||||| ||| |||||||| || || ||||| Sbjct 482 CCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAA 541 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||||| | | |||| || |||||||| || | ||||| |||||||||||||||| Sbjct 542 CCTGGCGATGAACTTCAGCAATGAGGTGCAAGTGCCG-GAGGCTCGCTGCTTCTACGGCT 600 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| ||||||||| | ||| || ||||||||| Sbjct 601 TCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACA 660 Query 42583 TCCTGGATCCCGTCGAGCG---TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 || ||| |||| ||| | || |||| ||||| |||||||| || ||| Sbjct 661 TCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGT---GCCATCGAGACGATCCCGTGCG 717 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 | |||||||||| |||||||||||| ||| || || | | | | | | Sbjct 718 TGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCCTACCCGG 777 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | ||| | || || ||||||| |||||||| ||||||||||| ||||| ||||| Sbjct 778 AGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCA 837 Query 42760 TCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||||||||||||| || || || ||||| || || | |||||||||||| |||||| Sbjct 838 TCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGTCTGAGCTTCTCGAACGAGCTCATC 896 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 ||| |||||||||| |||| | |||||| || |||||| ||| ||||| | | | Sbjct 897 AGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGA---AGTTGGTG 953 Query 42879 CACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 |||||| || || || || | || ||| | || || |||| ||| ||| | Sbjct 954 AACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCAC 1013 Query 42939 GAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 |||||| | | | ||||| |||||| ||| ||||||||||| | ||||||||| Sbjct 1014 GAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGC 1073 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCC-GCCTCTA 43057 |||||||| ||| ||| ||||||| || |||| | ||||| || || |||| Sbjct 1074 CAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGT-GCATCCAAGATCTA 1132 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| | | ||| ||||||| ||||| | |||||| || |||||||||||||||| Sbjct 1133 CAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTT 1192 Query 43118 TTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||||||||||| | ||| ||| Sbjct 1193 CTTCGAGAAGCGCGTGGGCGAGTAC 1217 >seq188 Length=41916 Score = 403 bits (446), Expect = 3e-107 Identities = 1418/2170 (65%), Gaps = 102/2170 (5%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTG-GTCCTC--AGGTAGTACATGCCGG 243791 ||||| ||||||||| || || |||| | | |||| | | |||||||||||| | Sbjct 19336 CCACGGTGAACTGGATGG---CGTCGGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCG 19392 Query 243792 TCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCT 243851 ||||||| || | |||||||| || |||||||| ||||||||| | ||| | Sbjct 19393 TCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTGCTAATCGTC---- 19448 Query 243852 TTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC- 243910 |||||| ||| | | | ||| || |||||||||||| | | ||| |||| Sbjct 19449 --GGGTCG-----GCAATGTGA-ATGTTCAGCGACTGGCTCTGGCAAATGTAGG-CGCCA 19499 Query 243911 CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATG 243970 || || || | || | | | | ||||||| ||||| || |||||||||| | Sbjct 19500 CGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 19559 Query 243971 GGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGC 244030 ||||| || || || | || | |||||||| ||||| || | | | | Sbjct 19560 TCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAGCCAGAATC 19619 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC---CAGCGCCTCGACCAGGTGC 244087 ||| |||||| | | |||| | ||||| |||| |||| ||| | |||| | Sbjct 19620 TGGTTGCGCACCTCAGGCGTCCAGATGCCCA---GCTCGATCAGCTCCTTCATGAGGTAC 19676 Query 244088 CTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||||||| | | ||||| || | |||||||||||| | ||| | ||| || | Sbjct 19677 TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTAC 19736 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||||||| ||| ||||||||| ||||| ||||| |||||| ||||| || | | Sbjct 19737 GGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCC 19796 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAG 244264 || || || ||| | | ||||||| | ||| || || ||||| | ||| Sbjct 19797 ACGAGGAGCGAGTTGCGGATGCCGTGCTT---GATCACGTTCTCCTTGAGCGCAGCCCAA 19853 Query 244265 TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCC 244324 ||||||| |||||| || || | | || |||||||||||| ||||| | | ||| Sbjct 19854 TCCCACAAGCCCGA-AGA----CGGGGT-GACGCCCCACATGTCGAACTGGAAGATACCC 19907 Query 244325 TTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA-GGGACCGTCGCGCTGGGCCAGCT---T 244380 |||||| | || |||| | | ||| ||| ||| || | | || ||| | || | Sbjct 19908 TTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTC-CTTGGCGATCTCCAT 19966 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 || |||| | | ||||||||||| ||||||||||| || |||| | || || Sbjct 19967 CGAGGTCTCC---ATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACG 20023 Query 244441 GGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 ||| |||| | | | | || | ||| | || || | || || || ||||| | Sbjct 20024 GGC-TTGCGGGCTCTCGAACGCATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGA 20082 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCACGGGGT 244556 |||| || || | || | ||| ||| ||||||| |||| || || |||||||| Sbjct 20083 CGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGC---GCCTCCTCCACGGGGT 20139 Query 244557 AAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCA 244616 | ||||| |||| || |||||||| | ||| ||||| | || | || ||| || Sbjct 20140 AGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACA 20199 Query 244617 GCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTG 244675 || ||| ||| | || | ||| |||||| ||||||| | | Sbjct 20200 GCTTCTGGTAGTTGAACAC-------TCC------------ATCCTCCACAAACTTGGGG 20240 Query 244676 AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735 ||||| || ||||||||||| || |||||||| || | ||||||| | |||| Sbjct 20241 AGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATC 20300 Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795 ||| ||| | ||| || | ||| ||||| |||| ||| || || |||||| |||| Sbjct 20301 TCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTG 20360 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855 ||||||||||| |||||||| ||| | || ||||| | ||| ||| | |||| | | Sbjct 20361 GCCGCGTCCTTGTACAGCATGAACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGCG 20420 Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG 244915 ||| || | | || |||| |||| |||| || ||||| |||||| | Sbjct 20421 AACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCG 20480 Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCAC 244975 ||||| | |||||||||| ||||||| ||||| || |||||| | ||||| Sbjct 20481 TACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAG 20540 Query 244976 ATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 | || ||||||| |||| | | || | || |||||| || ||||||| ||| || Sbjct 20541 AAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGA 20600 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAA 245095 || | ||||||||| | | | ||| || ||| |||||| | |||||||| Sbjct 20601 GCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGG 20660 Query 245096 AAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTG 245155 || || || |||||| ||||||| ||||||| ||||| |||| | ||| |||||| Sbjct 20661 AACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTG 20720 Query 245156 TTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTAT 245214 |||||||||||||| | | || | | ||||||| | ||| | || | || Sbjct 20721 CCTCCTCCCTGGTCCACATAGCGGGCCGTG-TCATTGAAGACCCTCAGCATGGGGATGAT 20779 Query 245215 GCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGAT 245274 ||||| || ||||| ||||| ||||||| | | || | | || |||| || Sbjct 20780 CCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCAT 20839 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 | ||||| | || ||||| |||||||||| ||||| ||||| ||||| Sbjct 20840 GCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTA 20899 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 |||||||| || ||| || |||| ||||| || || || |||||||| || Sbjct 20900 AATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACG 20959 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGA 245453 || ||| | ||| || || ||||| | ||||| |||||| | | || || | || Sbjct 20960 CGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAG-AACATCTGTGACATGA 21018 Query 245454 ACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTC 245512 | | ||||| || || || | ||||| | ||| || ||| || ||| | | Sbjct 21019 GCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGC-CACGCGC 21077 Query 245513 ATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT-CGGGTC-CCTTGAGCATGTAGGAGC 245570 |||| | |||||||| ||| | | || | | | || | || | |||| | Sbjct 21078 ATGATCATCTGCTGGGGGCGCTCCA--CGACCTTACCGTTCACGCGGAAGAGGTAGCCCC 21135 Query 245571 GCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTG 245630 |||||||||||||||| || ||||| ||| ||||||| || ||| ||| ||| | Sbjct 21136 GCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCCG 21195 Query 245631 CGTCGAGTCTC-TCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTTGCGCTATGAGGGG 245688 || || ||| || ||||| | | || || | | || | | | || ||||| || Sbjct 21196 AGTTAAG-CTCGTCCTTGTGCTCCATCAC-GAGCGCATACACGTCGTCGGCGATGAGTGG 21253 Query 245689 AGCC-CTGAGCCCG--GTGTCCGGATTGACGTTGAACCAGAGCCTC----TTGCACACCT 245741 ||| | | ||||| | || | || ||| ||| |||| ||| ||| Sbjct 21254 CGCCGCGGCGCCCGTCTTCTCGTGCGTGTTCTTGTGGAAGA-CCTCGATGTTG-TCAC-- 21309 Query 245742 CCGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCAACT 245801 ||| ||| | | ||| ||| |||||||||| || || ||||||||||||| || Sbjct 21310 TGAAGACCTT---GTTCGTGTTCTTGTGCAGGTTGGACACGGCGATGCGCGCCGCCAGCT 21366 Query 245802 TGCTGTAGTCGGGGTGAGTGGTGGTCATGTTGGAGGCCGTGTGGGCCAGCAGCTCGTCAA 245861 || | |||| ||||| ||| || || | |||||| | ||| ||||||||| | Sbjct 21367 TGGAGAAGTCTGGGTGCTGCGTGCTCTGGTACGCGGCCGTCTCGGCGGCCAGCTCGTCCA 21426 Query 245862 TCTCGGACGT 245871 ||||||||| Sbjct 21427 GCTCGGACGT 21436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944284605390000