Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq360 158 3e-33 seq3543 104 5e-17 >seq360 Length=27682 Score = 158 bits (174), Expect = 3e-33 Identities = 425/639 (67%), Gaps = 31/639 (5%) Strand=Plus/Plus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||| | || || || |||||||| |||||||||| | | ||||| Sbjct 13648 CTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGCGTC---TCGTA 13704 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || || || ||| || |||| ||||||||| || |||||||| ||||| || | || Sbjct 13705 GTGAATGATGTTGGTACAGACAGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGCT 13764 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 || |||| | ||| | ||||||| | |||||| ||||| ||| | Sbjct 13765 CGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCCAA 13824 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 |||||| |||||||| ||||| || || | | ||| ||| | ||||| ||||| ||||| Sbjct 13825 ATGGTTCGTCGGCTCATCAAGGAGCAGGATGTCTGCCTTCTGCAGCATGGCACGAGCAAG 13884 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 334021 | |||||||| ||||| || || ||||| || | || ||| || || Sbjct 13885 CTCAAGTTTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGCAT 13938 Query 334022 ATCA------AAGCCAACCGATTCTAGAGTAGTTACG-ATCTTTTCACGAGACCAAATGT 334074 || ||||| || | | || || || || | || || |||| | ||| Sbjct 13939 CTCCGGGGTGAAGCCCACGCTTCCGAGCGT-GTCACACACCTCGTCGCGAGG---AGTGT 13994 Query 334075 T-TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 | ||| | || | || || || |||||||| | | | || | || ||||| Sbjct 13995 TCTTCAGGTCCTCATCCACCA--GG--ATGAAGTCCACCACGGACAACTCAGCCTCGGAA 14050 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCCTT 334191 | | || | ||| || ||| | |||| |||| | | | || | ||||| || | Sbjct 14051 GCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGAGCGGCTG--GGGAAGCCCT 14108 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||||||||| ||||||||||||||||| || ||||| ||||| || || | Sbjct 14109 CGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGC 14168 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAA-CCGCGTATTGTTCAGAAGAATTTTT 334310 |||||||||| |||| |||||||||| | ||| || | |||||||| ||||| | Sbjct 14169 ACAGACCGTAACGGTGGCCACGCTTCA-AGCGAAGGCGGGCGTTGTTCAGCAGAATCATA 14227 Query 334311 CCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 ||||| || || || || ||||| || | ||||| ||| Sbjct 14228 CCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 14266 Score = 93.3 bits (102), Expect = 9e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||| | ||| ||| || Sbjct 13240 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAG 13299 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| ||||| || || | |||||| || || Sbjct 13300 GTGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTG 13359 Query 333434 CTTCCAAAC 333442 |||||| || Sbjct 13360 CTTCCACAC 13368 >seq3543 Length=1457 Score = 104 bits (114), Expect = 5e-17 Identities = 272/410 (66%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || ||| | || || || |||||| ||||||| ||||| ||| || Sbjct 800 CGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 859 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||| || | | || |||||| ||||||| || ||||||||| | ||| Sbjct 860 CCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACAC 919 Query 243438 ACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTC 243495 | |||| ||| || ||||| || ||| | ||||||||| || || || || Sbjct 920 GGACTTCGCGTGC-CTCATGTACTCGAAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTG 977 Query 243496 AAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 | ||| | || || || | | || | || ||| | ||||| | | || Sbjct 978 CACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC 1037 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 ||| || ||||||||||||| |||||| | ||||||||||| ||||| |||||| Sbjct 1038 GTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGAC 1097 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | | | | || ||| || | |||||| |||||||| || | || Sbjct 1098 CGCCTGCTGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGG 1157 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| ||||| || Sbjct 1158 ATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 1207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102814645743750