Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq188 190 2e-43 seq3543 118 1e-21 seq55 111 2e-19 seq146 102 8e-17 seq734 100 3e-16 >seq188 Length=41916 Score = 190 bits (210), Expect = 2e-43 Identities = 625/961 (65%), Gaps = 19/961 (2%) Strand=Plus/Plus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCT 153654 ||| | ||||||||| || || || ||| ||| |||| || || |||||| || |||| Sbjct 20243 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 20301 Query 153655 CGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGC 153714 || ||| | |||||| | || ||| | || ||||| || ||||| ||| Sbjct 20302 CGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 20361 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---A 153771 |||||| ||| | |||||| |||| | || ||||| | |||| || | ||| | Sbjct 20362 CCGCGTCCTTGTACAGCATGAACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGCGA 20421 Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 ||| ||| | ||| || | | || || ||| ||||| ||||||| || Sbjct 20422 ACCA---CAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCT 20478 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 ||||||| ||| ||||||||||| |||| ||| ||| ||||| || || || | Sbjct 20479 CGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGC 20538 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 | | || |||| | ||| || | || || |||||||||||| || ||||| | Sbjct 20539 AGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACA 20598 Query 153952 GCGCGTACATGAGGT--CGCGCGCCTTGCA-ATCCTCCGCGCCCATGTTGCGTTTCAGAT 154008 | ||||| | ||||| ||||||| |||| || | || | ||||| ||| | Sbjct 20599 GAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCG---CAGCT 20655 Query 154009 TGA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTA 154067 | | || | | | | |||||||||||| || || | ||||| ||| | | ||||| Sbjct 20656 CCAGGAACTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTG 20714 Query 154068 CGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGT 154124 ||||| ||| ||||| || || | ||| || | | |||||||| | || |||||| Sbjct 20715 CGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGG 20774 Query 154125 TCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGA 154184 | ||| | | | ||||| || ||| | |||| |||||| | | Sbjct 20775 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 20834 Query 154185 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTC 154244 |||| | ||| |||||| || ||| | |||| || ||| ||||| | ||||| Sbjct 20835 TGCATGCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTG 20894 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 ||| ||||| || || ||||| | | | | |||| ||||||||| ||| ||| Sbjct 20895 TCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGC 20954 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTC 154364 ||| |||| || || |||||| ||||| ||||||||||||| | | || | Sbjct 20955 GGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGAC 21014 Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 || | ||||| | | || | | ||| || | |||||| || ||||| ||| Sbjct 21015 ATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACG 21074 Query 154425 CGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCA 154484 ||||||| ||| ||||| || || || |||| || || | ||||| || || Sbjct 21075 CGCATGATCATCTGCTGGGGGCGCTCCACGACCTTACCGTTCACGCGGAAGAGGTAGCCC 21134 Query 154485 TTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCC 154544 ||||| || ||| | ||||| || | ||| ||||| || | || || ||||||| Sbjct 21135 CGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCC 21194 Query 154545 G 154545 | Sbjct 21195 G 21195 >seq3543 Length=1457 Score = 118 bits (130), Expect = 1e-21 Identities = 297/447 (66%), Gaps = 11/447 (2%) Strand=Plus/Plus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 ||||| || |||| |||||| || |||||| | || || || || ||| | || Sbjct 777 GAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCC 836 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||| | | || | | ||| | ||||| || |||| ||| |||||| | || Sbjct 837 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATC 896 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACC 52574 || ||||| || ||||||||||||| ||||||||| ||| || | |||| | Sbjct 897 AGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGAAGTTGGTGAAC 956 Query 52575 GAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGCGGTGGCTATCGAA 52631 || || |||| | | || | | || | || || |||| || || Sbjct 957 ---AAGCTGC---CGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAG 1010 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATG 52691 | ||||| | | | | |||| || || |||||| | ||||||||| | | |||| Sbjct 1011 CACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATG 1070 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAAAGTA 52750 ||| ||||||||||||| ||||| || || ||| || || || ||| |||| | Sbjct 1071 TGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGTGCATCCAAGAT- 1129 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 || ||||| || ||||| || | ||| | | || ||||| ||||||||||||| Sbjct 1130 CTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAA 1189 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| ||||||||||| || |||||||| Sbjct 1190 CTTCTTCGAGAAGCGCGTGGGCGAGTA 1216 >seq55 Length=70247 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || || || | | |||||||| || |||||||||||||| Sbjct 19643 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 19702 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| |||||||| ||||| || || Sbjct 19703 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 19762 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| |||||| || || | | || | || ||| | | |||||| Sbjct 19763 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 19822 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | || || || |||| || || || || ||||||||| Sbjct 19823 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19871 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || || || | | |||||||| || ||||||||||||||| Sbjct 19416 CCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19475 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| |||||||| ||||| || || Sbjct 19476 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19535 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || || | | || | || ||| | | |||||| Sbjct 19536 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 19595 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | || || || |||| || || || || ||||||||| Sbjct 19596 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19643 >seq146 Length=48309 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||||| || | || | | |||||||| || |||||||||||||| Sbjct 15306 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 15365 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || || || || || | | || || ||||| ||||| || || Sbjct 15366 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 15425 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 15426 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 15485 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || |||| ||| || ||||| ||||||||| Sbjct 15486 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15534 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||| || | || | | |||||||| || ||||||||||||||| Sbjct 15079 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15138 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || || | | || || ||||| ||||| || || Sbjct 15139 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15198 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 15199 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 15258 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || |||| ||| || ||||| ||||||||| Sbjct 15259 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15306 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||||| || | || | | || ||||| || |||||||||||||| Sbjct 15534 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCT 15593 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || || || || || | | || || ||||| ||||| || || Sbjct 15594 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 15653 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 15654 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCAC 15713 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || |||| ||| || || || ||||||||| Sbjct 15714 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 15762 >seq734 Length=14276 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 3775 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3716 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || ||||| ||||| |||||| || || | |||| Sbjct 3715 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTG- 3657 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || ||| || || | ||| | || || || ||||| || || ||| Sbjct 3656 TCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 3597 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 3596 AAGATCTGCATG 3585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496233709830000