Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04]
4,625 sequences; 39,143,447 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq146 82.4 5e-11
>seq146
Length=48309
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || ||||| || || || |||||||| ||||| || | | ||||||| | ||
Sbjct 15103 TGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGC 15162
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||||||| | |||| ||||| ||||| || || ||||||||||| ||||||
Sbjct 15163 TTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTC 15222
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| || | || || | || || ||||| ||||| || || || || |||
Sbjct 15223 TGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTC 15282
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| ||| || ||||| || |||||
Sbjct 15283 AAAGTCTTCACAAAGATCTGCAT 15305
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || ||||| || || || |||||||| ||||| || | | ||||||| | ||
Sbjct 15331 TGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGC 15390
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||||||| | |||| ||||| ||||| || || ||||||||||| ||||||
Sbjct 15391 TTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTC 15450
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| || | || || | || || ||||| ||||| || || || || |||
Sbjct 15451 TGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTC 15510
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| ||| || ||||| || |||||
Sbjct 15511 AAAGTCTTCACAAAGATCTGCAT 15533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357371854818125
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |