Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq55 154 1e-32 seq146 141 9e-29 seq188 109 5e-19 seq734 98.7 9e-16 seq3543 96.9 3e-15 >seq55 Length=70247 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||||||||| || || || ||||| |||| | Sbjct 19644 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19703 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 19704 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19763 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| || Sbjct 19764 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCAC 19822 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||| || || || || ||||||||| Sbjct 19823 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19871 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | |||| |||||| || | |||||||| || || || ||||| |||| Sbjct 19415 TCCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 19474 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 19475 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 19534 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| | Sbjct 19535 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCA 19593 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | || ||||| |||| || || || || ||||||||| Sbjct 19594 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19643 >seq146 Length=48309 Score = 141 bits (156), Expect = 9e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 15091 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 15150 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 15151 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15210 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | ||| | Sbjct 15211 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGAT 15269 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || ||||| ||||||||| Sbjct 15270 CGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15306 Score = 141 bits (156), Expect = 9e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 15319 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 15378 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 15379 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15438 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | ||| | Sbjct 15439 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGAT 15497 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || ||||| ||||||||| Sbjct 15498 CGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15534 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | |||||| || || || || ||||| |||| || |||||| Sbjct 15547 CGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 15606 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 15607 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15666 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||| | ||| || || | ||| | Sbjct 15667 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCTGACGGCTCCACGTCCAAGGTGAT 15725 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || || || ||||||||| Sbjct 15726 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 15762 >seq188 Length=41916 Score = 109 bits (120), Expect = 5e-19 Identities = 335/511 (66%), Gaps = 13/511 (3%) Strand=Plus/Plus Query 145701 CGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCG 145760 ||||||| | |||| ||| ||||||||||| | || | || ||| | ||| Sbjct 19321 CGAGGCC-CTGCTT----GTCCACGGTGAACTGGATGGCGTCGGCTTTCGGGCGTCCGCG 19375 Query 145761 CAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA- 145819 || ||||||||||| ||||||||| |||| ||| | ||| ||||| ||| || || Sbjct 19376 CATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAG 19435 Query 145820 --TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAA 145877 || | | | ||| || ||||| | | || || || |||||||| |||| Sbjct 19436 CTTG--CTAAT-CGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATG-T 19491 Query 145878 AGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTT 145936 ||| ||| ||||| || | || ||| | || | ||| || || ||||| | || | Sbjct 19492 AGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCT 19551 Query 145937 TAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGG 145996 | | |||||||| || | || || | | |||||||| || ||| || | Sbjct 19552 TGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAG 19611 Query 145997 CCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGA 146056 ||| || | |||||||| || || || | ||| || || | || |||| |||| Sbjct 19612 CCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGA 19671 Query 146057 GATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGG 146116 | |||| ||| || | | ||||| || || || ||||| | |||| ||| | Sbjct 19672 GGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACG 19731 Query 146117 TGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGT 146176 || ||||||||| ||||| ||||| || | ||||| ||||||| || || ||||| Sbjct 19732 TGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCG 19791 Query 146177 ACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| || | ||||| | | |||||| Sbjct 19792 GAGCCACGAGGAGCGAGTTGCGGATGCCGTG 19822 Score = 98.7 bits (108), Expect = 9e-16 Identities = 337/517 (65%), Gaps = 25/517 (5%) Strand=Plus/Plus Query 147070 TGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCGCC---CTGATCGACG 147126 ||||| ||||||| ||| ||||| | |||||| ||||| || || ||| || || Sbjct 20679 TGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACA 20738 Query 147127 TGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGAT------TTT 147180 | ||| || ||| ||||||||| | | ||||| | || ||| |||| || Sbjct 20739 TAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTC 20798 Query 147181 GTGGTGCCGTTGTAT-TGA-----GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCG 147234 ||| || | |||| || |||| || | | |||| ||| | || | ||||||| Sbjct 20799 GTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTAATGCCAATACCTCCG 20858 Query 147235 CCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCT 147294 || || || || | ||| ||| | | || | ||| ||||| || || ||| Sbjct 20859 GCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCG 20918 Query 147295 TCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAAC 147354 |||| ||| ||||||||||||| ||| || ||||| |||||| || ||| Sbjct 20919 TCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAG 20978 Query 147355 AGCGTGGGGCTGGCGTGCGT---GAACGTGCCCAGACTCATCAATTGATACGT-TTCAAT 147410 |||||||| | |||||||| |||| | | | ||| | | |||||| | || | Sbjct 20979 AGCGTGGGCGTCGCGTGCGTAAAGAACAT---CTGTGACATGAGCTCATACGTGTGCAGT 21035 Query 147411 GGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGG 147470 | ||| | | ||| | |||||| |||| || |||||||||| ||| |||||||| Sbjct 21036 GCCGC-CTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCATCTGCTGGGG 21094 Query 147471 TCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGTC-AGAGTTTTGAAAC 147529 || ||| | | | | || || || || || || | || || || ||||| | Sbjct 21095 GCGCTCCACGACCTTACCGTTCACGCGGAAGAGGTAGCC-CCGCTCGAGCGTCTTGAAGC 21153 Query 147530 CAAAGTACTTGTAGTCGTAGTCCCTGTTGTGCTTGAT 147566 | ||||| | ||| || |||||| || ||| |||| Sbjct 21154 CGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGAT 21190 >seq734 Length=14276 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 3773 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3714 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||| ||||||||| |||||||||||||| | || Sbjct 3713 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3654 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 3653 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 3594 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 3593 ATCTGCATG 3585 >seq3543 Length=1457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/169 (74%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| | | | | ||| | |||||||||| || || |||||||||||||| || Sbjct 1050 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTA 1108 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| | |||| ||||| ||| || |||| || ||||| | ||| | | | Sbjct 1109 CTCACTGGGTGCATCC-AAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 1167 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||||||||| |||||||||||||| ||||| || Sbjct 1168 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475473310110000