Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq188 190 3e-43 seq3543 168 1e-36 >seq188 Length=41916 Score = 190 bits (210), Expect = 3e-43 Identities = 414/610 (68%), Gaps = 15/610 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| |||||||| ||||||| |||| | || || || |||||||| Sbjct 19331 CTTGTCCACGGTGAACTGGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 19387 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||||| ||| |||| | ||||||||| | ||| ||||| | | Sbjct 19388 GCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTGCTAATCGT 19447 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| |||||||||||||| |||||||| ||| ||| ||||||| || || | Sbjct 19448 CGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATG-TAGGCGCCACGGTCCG 19506 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | || ||||||| |||||||||||||||||| || || || Sbjct 19507 CCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGA 19566 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 || | || | || ||| | ||| | ||||| ||| |||| | ||| | Sbjct 19567 CCTGGTCCGGAATGGATT-TCACCTTCTGCACGGAGCCACCGTCAGCCA-GAATCTGGTT 19624 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||||| | |||||||||| || |||| ||| | Sbjct 19625 GCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTACTTGTTCAC 19684 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || || | |||||| | ||| || ||| ||| ||| | || |||| Sbjct 19685 GATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTACGGCTCGAT 19744 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | ||| |||||||| ||||||||||| || || |||||||| ||||||| ||| || Sbjct 19745 GGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAG 19804 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA---T 204369 |||||||| | |||| || || | ||| || | | ||| || || Sbjct 19805 CGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCCCACAAGCC 19864 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429 || | || | |||||||||||||||||||| ||||| || | ||| | || || Sbjct 19865 CGAAGACGGGGTGACGCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGATCC 19924 Query 204430 CTTGTACGTC 204439 || | ||||| Sbjct 19925 CTGGAACGTC 19934 >seq3543 Length=1457 Score = 168 bits (186), Expect = 1e-36 Identities = 487/740 (66%), Gaps = 21/740 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 1202 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTT 1143 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||||| ||| ||| | || || | ||||| | ||| ||||| || || Sbjct 1142 CTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAGCAGGCGGTCGGCCACGAACTC 1083 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || || |||| || || | |||| |||||||||| || Sbjct 1082 GATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCT 1023 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||||||| | || || || ||| ||| ||| | || || | | Sbjct 1022 CACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATC-GCGTGCACGCGGCTCTCCG 964 Query 159888 CCGGCTTGCCCA--AAATGTG-GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| || || | | || ||| ||||||||| ||||| ||||| | Sbjct 963 GCAGCTTGTTCACCAACTTCGAGT------ACATGAGGCACGCGAAGTCCGTGTGCATGC 910 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 |||||||||| ||||| |||||| || | | | || || ||||||| || ||| | Sbjct 909 CCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCT 850 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| ||| ||| | | | | || || || ||||||||||| || ||| Sbjct 849 TGAGCCAGAAGATGGA-GCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAAC 791 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCA 160119 |||| || | ||| | || | | ||||| |||| ||| ||||| Sbjct 790 GCCAGCAGACGCTCCGGGTAGGACG----AAACACGAGGGTCACACCACTTGAGCGCCCA 735 Query 160120 TTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 |||||||| | | |||||| || ||||| ||| | ||| |||| ||| Sbjct 734 GCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGATCCTTCTC 675 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | | |||||||| || | |||||| |||||||| || | ||| | || || Sbjct 674 CACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTC 615 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 |||||| ||||| ||| |||||| | |||||| | |||||||| | |||| Sbjct 614 GATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTGCACCTCATTGCTGAA 555 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | |||| || | || || | |||||| ||| || ||||| || | |||||| Sbjct 554 GTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAATGCTAGCACGTG 495 Query 160360 AGAGATGAAATGTCTCTCGT 160379 |||||| || | ||||| Sbjct 494 CTTGATGAAGTGGCGCTCGT 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795109230090000