Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3543 109 7e-19 seq142 89.7 6e-13 >seq3543 Length=1457 Score = 109 bits (120), Expect = 7e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 801 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 860 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 861 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 910 >seq142 Length=48988 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 ||||| | |||| |||||||| || ||| | || || |||||||| || |||||| Sbjct 15338 AGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 15279 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || ||||| || |||||||| | ||||| || || || || | || |||||||||||| Sbjct 15278 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 15219 Query 176996 TCTGTCA 177002 || |||| Sbjct 15218 TCAGTCA 15212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620706513330000