Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq147 122 3e-22 seq190 100 8e-16 seq360 96.9 1e-14 >seq147 Length=47797 Score = 122 bits (134), Expect = 3e-22 Identities = 180/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| |||||||| || || || || ||||| |||||||| || || ||||| Sbjct 35733 CGGCGCTGGATATAACCTGTCTCAGCAGTCTTCACAGCCGTATCAATCAGTCCTTCACGA 35674 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||||| || || ||| | | ||| | || Sbjct 35673 CCACCCATGGCGTGGAAGAAGAACTCTTGAGGGGTCAGACCCTTCAGGTACGAGTTTTCG 35614 Query 302713 ACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 ||||||||||| |||||| | ||| || |||| |||| ||||| |||| | Sbjct 35613 ACGAAACCACGACTCTCGGGACCCAGATCATC---CTTGCCGTAGTGCGGCAGCGTCCGG 35557 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | | | || || ||||||||||| || || || |||||||| |||| || | ||| Sbjct 35556 TGGTTGAAACCATACGGGATACGCTTGCCTTCGACATTCTGCTGACCCACACAAGCAATA 35497 Query 302830 ATCTGCGAAATATT 302843 |||||||| ||||| Sbjct 35496 ATCTGCGAGATATT 35483 >seq190 Length=41692 Score = 100 bits (110), Expect = 8e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| |||||| |||||||| || || | ||| | |||||| |||||||| Sbjct 2882 CCGTGAGAGATCAGACAATCGCGCTCCATCTCTCCCATACGCAAACCACCCTCGCGAGCA 2941 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 2942 CGACCCTCCATCGGCTGGCGCGTCAGCATCGTCACGGGACCACGCGAGCGCGAGTGGATC 3001 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 3002 TTGTCGTCGACCATATGCTTTAGGCGCTGGTAGAACGTGGGTCCGATGAAGAT 3054 >seq360 Length=27682 Score = 96.9 bits (106), Expect = 1e-14 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || ||||||||||||||||| ||||||||| | || || || || || Sbjct 12754 CTTGATGGCCGAAGCAAGAGCACCAAGCGAGTCGCGGTCGAGGTAGTTCGTGGGCTCATC 12813 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || || |||| || ||||| |||||||| Sbjct 12814 AAGCACCAGGATGTGCGGGTTCAGCCACATGGCAGCTCCCAGCACAACCTTCACCTTCTG 12873 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | | ||| ||| Sbjct 12874 ACCACCAGACAGACCACGCATGCGCGAGTGCGTACCGAACTCAGCACCCAGGCCGAAGCA 12933 Query 354183 GTCGAGATGTTTCTGTAC 354200 |||||| || ||||| || Sbjct 12934 GTCGAGGTGCTTCTGCAC 12951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471730383308625