Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1036 221 2e-51 seq188 208 1e-47 seq3543 194 3e-43 seq809 156 7e-32 seq392 143 4e-28 seq130 132 8e-25 seq762 113 7e-19 seq427 104 4e-16 seq235 98.7 2e-14 seq38 96.9 5e-14 seq1259 93.3 7e-13 seq272 91.5 2e-12 seq815 89.7 8e-12 seq468 86.0 1e-10 >seq1036 Length=9148 Score = 221 bits (244), Expect = 2e-51 Identities = 338/480 (70%), Gaps = 4/480 (1%) Strand=Plus/Minus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCC 2018975 |||||| | || |||||||| ||| |||| | ||| | ||||||||| || | Sbjct 4564 CCGTGGGTGGAGAAGTACCGGCCGCGCATGCTGGCGGACGTGGTGGGCAACCGCGACACG 4505 Query 2018976 GTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGC 2019035 | || || |||| |||| | ||||||||| | |||||| | ||| ||||| Sbjct 4504 ATCGCGAGTCTGCAGGCTATGGCGCAAGCGGGCAACATGACGAACCTCATCCTGTCGGGC 4445 Query 2019036 CCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCG 2019095 ||||| || ||||| |||||||| |||||| ||| ||||||||| || | ||| | Sbjct 4444 CCGCCGGGAACGGGGAAGACCACCAGCATCCTGTGTTTGGCGCGCGAACTGCTAGGCACC 4385 Query 2019096 GCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTG 2019155 | | | |||||||||| || ||||| ||||| ||||| |||||| | ||| ||| Sbjct 4384 AGTGTCAAACAGGCCGTGCTGGAGCTCAACGCGTCTGACGACCGCGGCATCGACACGGTG 4325 Query 2019156 CGTAGAATCATCAAGCA--TCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACA 2019213 || | | |||||| | ||| | ||| | || ||||| || |||||||||| Sbjct 4324 CGCACGAAGATCAAGATGTTTGCGCAGCAAAAGGTGACG--CTGCCCCCGGGCCGCCACA 4267 Query 2019214 AGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGAT 2019273 || | | ||||| || || ||||||| | || | |||||||| ||||| || || Sbjct 4266 AGATTGTGATCCTGGACGAAGCCGACTCGATGACAGCCGCGGCCCAACAGGCGCTGCGCC 4207 Query 2019274 CGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGA 2019333 |||||||| | | | | ||| ||| |||| |||||||||||||||| ||| | | Sbjct 4206 GCACCATGGAGATCTTCTCGGCCACCACGAGGTTCGCGCTGGCCTGCAACAACTCGACTA 4147 Query 2019334 TGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACG 2019393 | ||||||| || |||||||||| ||||||||| | ||||| ||||||| |||||| Sbjct 4146 AGATCATCGAGCCCATCCAGAGCCGCTGCGCCATCCTCCGCTTCACGCGCCTACCCGACG 4087 >seq188 Length=41916 Score = 208 bits (230), Expect = 1e-47 Identities = 350/505 (69%), Gaps = 15/505 (3%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| |||||||| |||||||| || ||||| | |||||||| | | |||||||| Sbjct 20729 CTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGA 20788 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| | |||| | || |||||| | |||||| | || ||| Sbjct 20789 TGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTAATGCC 20848 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || |||||| |||||||||| |||||||| || ||||| ||||| |||||||| Sbjct 20849 AATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTC 20908 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||||||||| ||| |||| ||| ||| || |||||||| ||||| |||| |||||| Sbjct 20909 AATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCC 20968 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| || ||||||||||||||||| ||| | || || |||||| ||| || || Sbjct 20969 GGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATACGT 21028 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 | ||| |||| | |||||| | | | | ||||| || || || Sbjct 21029 ---GTGCAGTGCCGCCTGGATGTCTTG--CTTGTGAATACCCA-----GC-----GCCAC 21073 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 |||||||||||| | |||||| ||||| ||||| || ||| | |||||| Sbjct 21074 GCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTACCGTTCACGCGGAAGAGGTAGCC 21133 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 ||| || ||| | ||| ||||| ||| | | ||| || |||||| |||||| Sbjct 21134 CCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGC 21193 Query 2074020 GGCGTCGAGGGCCTCCTTGTGCGCC 2074044 | || || | ||||||||| || Sbjct 21194 CGAGTTAAGCTCGTCCTTGTGCTCC 21218 Score = 163 bits (180), Expect = 4e-34 Identities = 290/429 (68%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 |||| ||||| |||| ||| | ||||| |||||||||||||| | |||| Sbjct 20300 CTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 20359 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | | |||||||||| ||||||| | ||| |||||||||| |||||||| | |||||| Sbjct 20360 GGCCGCGTCCTTGTACAGCATGAACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGC 20419 Query 2071704 CGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNNNNNNNNNN 2071763 |||| | || | || | || | | |||||| |||| Sbjct 20420 GAACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTC 20479 Query 2071764 NNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCA 2071823 | || | || || || |||| |||||||| || ||||| ||||| ||||| Sbjct 20480 GTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCA 20539 Query 2071824 AAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAG 2071883 || || ||| | |||| | |||| || ||| ||||| ||| |||||| Sbjct 20540 GAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAG 20599 Query 2071884 GCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAG 2071943 |||| ||||| |||||||| |||| | ||| |||||||||||||| ||| || || Sbjct 20600 AGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAG 20659 Query 2071944 CCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTT 2072003 | |||| | ||||||||||||||||||||||||| ||| || | ||| |||||||| Sbjct 20660 GAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTT 20719 Query 2072004 GCCGCCGCC 2072012 ||| || || Sbjct 20720 GCCTCCTCC 20728 >seq3543 Length=1457 Score = 194 bits (214), Expect = 3e-43 Identities = 190/243 (78%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||||| ||||||||||||||| |||||| |||||||||||||||| ||| Sbjct 1231 ACACCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 1172 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG----CACCC 794008 ||||||| |||||||| ||||||||| | ||| || || ||| | ||||| Sbjct 1171 GAGATCATATCCATCCAGTCGAACGGGTT---CTTCACGTTGTAGATCTTGGATGCACCC 1115 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 || || |||||||||||||| ||||| || ||||||||||||||||| || | ||| Sbjct 1114 -AGTGAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTT 1056 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 ||||||||| ||| ||||||| ||||| ||||| || ||||| | ||| ||| | || || Sbjct 1055 CATGCCGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGC 996 Query 794129 CTC 794131 || Sbjct 995 GTC 993 Score = 192 bits (212), Expect = 9e-43 Identities = 240/327 (73%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| | ||||| |||| || || |||||||||||||||||| Sbjct 910 CCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTC 851 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 850 TTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAAC 791 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | || ||||| | | | | | | | || |||||| | |||||| Sbjct 790 GCCAGCAGACGCTCCGGGTAGGA--CGAAACACGAGG-GTCACACCACTTGAGCGCCCAG 734 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 ||||| ||| ||| | || | ||| |||||||| || | | ||| |||||||| Sbjct 733 CGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGATCCTTCTCC 674 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || | |||||||| ||| |||||||| || |||||||| ||| ||||||||||| ||| Sbjct 673 ACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCG 614 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||||||||||||||| || |||||| Sbjct 613 ATGGCGATCTGGAAGCCGTAGAAGCAG 587 Score = 158 bits (174), Expect = 2e-32 Identities = 190/254 (75%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || ||||| ||||| || ||||| ||||||||||| |||||||||| Sbjct 583 GCCTCCGGCACTTGCACCTCATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCG 524 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||||| ||||| || || || ||||||||||| ||||| ||||||| ||| | || Sbjct 523 TCGCTGGCAGCGAAGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGG 464 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 |||||| | |||| || || ||||| | ||||||||| ||||| || || || Sbjct 463 TTCCCCCAGTCCTTCAGGTCGTGCACC-AGGTCCAGCTCCTCGGCCGTCCAGAACGACGC 405 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGGGAACAGAACAAAG 796386 ||| ||||| |||||||||| ||| | ||| || | |||| |||||||| || || Sbjct 404 CTCCGCCTTCTTGTACATCTGCCACA--CGTCGTGCTCCTGGATCGGGAACAGCACGAAC 347 Query 796387 CGATTGGGGTTCTC 796400 || || |||||||| Sbjct 346 CGGTTCGGGTTCTC 333 >seq809 Length=12734 Score = 156 bits (172), Expect = 7e-32 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || |||||||| || ||||| || ||||||||| ||||||| || || | | Sbjct 11644 TGAACTTAGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCACCAGGGA 11585 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||| ||||||||||| ||| || | ||| |||||| | Sbjct 11584 GCATGAGGCGCACGGCCGTCTGGATCTCACGGCTGGACAGCGTCGACTTCTTGTTGTAAC 11525 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| |||||||||| Sbjct 11524 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 11465 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||| || |||||||||| Sbjct 11464 TGATCGACATGCCGCGCTTGCTGATACCCGTCTCGGGGTGCACTTGACGCAGCACCTTGT 11405 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | | | ||||||||| Sbjct 11404 AGATGTACGTCGAGTACGA 11386 >seq392 Length=25963 Score = 143 bits (158), Expect = 4e-28 Identities = 224/318 (70%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 118582 CGCCCAGGAGGACGCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACA 118641 ||||||| | | || |||||| ||| | | ||| |||| |||||||||||| || Sbjct 6819 CGCCCAGCACGGAGCTCGTGACGGTGCTGGCGCCGCTCTTCTCGACGCCGCGCATGACCA 6878 Query 118642 CGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCG-TGACCTCGCTG 118700 |||||||||| | |||||| ||| ||| | ||||| | | || | |||| | || Sbjct 6879 TGCACATGTGGGTGGCCTCGATCACAACGGCCACGCC-CTTGGGCTCAATGACGCCCATG 6937 Query 118701 ATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATG 118760 ||| ||||||||| ||||| |||||||||||| | ||| ||| | | Sbjct 6938 ATGGCGGTGGCGATCTGCTTGGTGAGGCGCTCCTGCACCTGCAGACGGCGCGAAAAGACC 6997 Query 118761 TCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACG 118820 ||| | ||||| || |||||| ||||| | | |||| ||| | ||| || | | Sbjct 6998 TCGCTCACGCGCGCGAGCTTGCTGAGGCCCAGCACTTTGCCGTTGGGGATGTAACCGATG 7057 Query 118821 TGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCG 118880 ||| ||||||| | || |||| || |||||||||||||||||| | | ||| ||||| Sbjct 7058 TGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATGGAGTACAGGTCGATGTCC 7117 Query 118881 CGCACGGTCACCATCTCG 118898 |||||| | ||||||||| Sbjct 7118 CGCACGATGACCATCTCG 7135 >seq130 Length=50673 Score = 132 bits (146), Expect = 8e-25 Identities = 174/238 (73%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 1217382 GACCGACCCATTGTGCACCGCGACCTCAAGAGCAGCAACCTGTTGGTCGACGACAATTTC 1217441 || || || ||| ||||||| |||||||||||| |||| ||||||| ||| | || || Sbjct 5957 GAGCGGCCGATTCTGCACCGAGACCTCAAGAGCCCCAACTTGTTGGTGGACAAGAACTTT 6016 Query 1217442 ACGATCAAGGTGGCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGC-GACGATGAC 1217500 | || ||| || | ||||||||| | |||||| || | || ||| ||| ||||| Sbjct 6017 AACATTAAGTTGTCAGACTTTGGCCTGGCCCGCGTCAAGGCTCAC-GTGCAGACCATGAC 6075 Query 1217501 ---CCGGTGCGGCACGCCGGCGTGGACGGCGCCCGAGATCCTGCGCGGCGAGCGCTACTC 1217557 | ||||||||| ||||| |||||||||| | ||| || | || ||| | Sbjct 6076 GGGCAACTGCGGCACGGTCCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAGTACAC 6135 Query 1217558 GGAAAAGGCCGACATCTACTCTTTCGGCATCGTCATGTGGGAGATCATCACGCGCAAG 1217615 ||| ||||| ||| ||| ||| ||||| |||||||| ||||||||| ||||| || || Sbjct 6136 GGAGAAGGCTGACGTCTTCTCGTTCGGGATCGTCATCTGGGAGATCGTCACGGGCGAG 6193 >seq762 Length=13678 Score = 113 bits (124), Expect = 7e-19 Identities = 229/336 (68%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGT 2175135 ||||| |||||||||| || || || || |||| | ||| | || | || |||| Sbjct 12792 TGCCGCCGGTGCCGTTCTTGAAGCCCACAGGCATGGACAGGCCACTCGTGAGCTCACGGT 12733 Query 2175136 GCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAAT 2175195 ||| |||| |||||| ||||| ||||| | || ||||||| ||| ||||| ||| Sbjct 12732 GCAGCTGGGACTCGGTCGTGCGAGCGCCAATAGCCCCCCACGACACCAGGTCGGCCGTGA 12673 Query 2175196 AGGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCA 2175255 | ||| | | | | ||||||| | ||||||| || | || || || Sbjct 12672 ACTGCGGTGAGATGGTGTCCAAGAACTCGAGACTCACGGGCAACCCCAG--CG-CGTTCA 12616 Query 2175256 GGTCGCGCAGCAGTCGACG--CGATGTGGCGAGGCCGGCGGCCAGGCGGCACGACCCGTC 2175313 ||| |||||||| || ||||| || | ||| | | |||| | ||| ||| Sbjct 12615 CGTCCAGCAGCAGTTTGCGTGCGATGCGG--ATGCCCTTGTTGATGCGGAAGGACTGGTC 12558 Query 2175314 GAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATA 2175373 ||||| |||||| || || |||||||| |||||||||||||||||||| |||| || Sbjct 12557 CAGGTCCGGGTCGTTGATGAGTCCCTTCCAGCCGACGGTCGTGCGCGGCTTCTCGAAGTA 12498 Query 2175374 GGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTC 2175409 | |||||||| ||||| || || || ||| ||| Sbjct 12497 CGTGCGCATGATGACCAGCAGCTCGCCGTCGAGCTC 12462 >seq427 Length=24260 Score = 104 bits (114), Expect = 4e-16 Identities = 115/150 (77%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 679834 AGCCCATCGAGCGAGCGGATGCGCGACAGCGCCACGTAGGCCTGGCCACAGTCAAAGATG 679893 ||||| || |||||||| | ||| ||||| ||||| |||||||||||| | || || | | Sbjct 5084 AGCCCTTCCAGCGAGCGCACGCGGGACAGTGCCACATAGGCCTGGCCAAACTCGAACACG 5025 Query 679894 C-CG-CTCATCGAGATGACAGCGCGGTCCAACGACATGCCCTGGCACTTGTGGATGGTCA 679951 | || | ||| | |||||| ||| ||||||| ||||||| |||||||||| | | Sbjct 5024 CGCGACAGATC--CAACACAGCGGCGTCGAACGACAGTCCCTGGCTCTTGTGGATGCTGA 4967 Query 679952 TGGCCCACGCCAGCAGCAGTGGCACCTGCC 679981 ||||||| |||||| || |||| ||||| Sbjct 4966 TGGCCCAGGCCAGCGCCAACGGCAGCTGCC 4937 >seq235 Length=35866 Score = 98.7 bits (108), Expect = 2e-14 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 2035628 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGG 2035687 ||| || ||| | ||||| |||||||||||| | ||||||||| ||| || || |||| Sbjct 19076 CCTGTTCGAGCTCATCCTGGCCGCCAACTACATGGACATCAAGAGCCTGCTGGACTTGGC 19017 Query 2035688 GTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTT 2035747 |||| | ||||||| | | || ||||| ||| ||||| |||| |||||| |||| || Sbjct 19016 GTGCGCTAAGGTGGCCAGCATGATTAAGGGAAAGACGCCCCAGGAGATCCGCGAGACGTT 18957 Query 2035748 TAACATC 2035754 |||||| Sbjct 18956 CAACATC 18950 >seq38 Length=79914 Score = 96.9 bits (106), Expect = 5e-14 Identities = 171/243 (70%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 1249560 CGGCGGCCACGGGCGTCGCCTATCTGCACGCGCTCGACCCGCCCGTCGTCCACCGCGATC 1249619 || || ||| | || || | || |||||| |||| |||||||| ||| | ||||| |||| Sbjct 75666 CGTCGCCCATGCGC-TCACGTACCTGCACTCGCTGGACCCGCCAGTCCTGCACCGTGATC 75724 Query 1249620 TCAAGAGCAGCAACCTGCTGGTCGACGACGAGTACAATGTCAAGGTGGCCGACTTTGG-- 1249677 ||||| || ||| | ||| || | ||||| | | ||||| | |||||||| Sbjct 75725 TCAAGTCCAAGAACATCCTGCTCAGCTCCGAGTTGGAAGCGAAGGTCACGGACTTTGGCA 75784 Query 1249678 TCTCGCGCGCATCCGCGAGGACAATGCCACCATGACG--CGGTGC-GGCACGCCGGCGTG 1249734 |||| |||| | | ||||| |||||||| ||||| |||||| || ||| Sbjct 75785 TCTCCCGCGAAA--GGATTGACAAG---ACCATGACTGCCGGTGTAGGCACGTCGCTGTG 75839 Query 1249735 GACGGCGCCCGAGGTCATCCGCGGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGAT 1249794 || |||||||||||| || |||||| | |||||||| |||||| ||| |||| | Sbjct 75840 GATGGCGCCCGAGGTGATGATAGGCGAGAGGTACGACGACAAGGCCGACATCTTCTCGTT 75899 Query 1249795 CGG 1249797 ||| Sbjct 75900 CGG 75902 >seq1259 Length=6897 Score = 93.3 bits (102), Expect = 7e-13 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 1217394 GTGCACCGCGACCTCAAGAGCAGCAACCTGTTGGTCGACGACAATTTCACGATCAAGGTG 1217453 |||||||||||||||||| | ||| || || | || ||| ||| |||| || Sbjct 6058 GTGCACCGCGACCTCAAGTCGAAGAACGTGCTGCTAAACCGCAAGTTCCATGCCAAGCTG 6117 Query 1217454 GCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGCGACGATGAC--CCGGTGCGG-C 1217510 |||||||||| | ||||| | | | ||| | ||||||||| | || | || | Sbjct 6118 AGCGACTTTGGCGTCAGCCGCAAGACCCACGTCAACGAGACGATGACGTCTGGCGTGGGC 6177 Query 1217511 ACGCCGGCGTGGACGGCGCCCGAGATCCTGCGCGGCGAGCGCTACTCGGAAAAGGCCGAC 1217570 |||| | |||||| |||||||||||| | ||| || |||||||| ||||||||| Sbjct 6178 ACGCTGCTGTGGACCGCGCCCGAGATCATTGAGGGCAAGAAGTACTCGGAGAAGGCCGAC 6237 Query 1217571 ATCTACTCTTTCGGCATCGTCATGTGGGAGATCATCACGCGCAAGCAGCC 1217620 ||||| || | || |||| ||| ||||| |||| || ||| ||| Sbjct 6238 ATCTATTCGCTTGGAGTCGTGCTGTCAGAGATGGACACGTGCGAGCCGCC 6287 >seq272 Length=32830 Score = 91.5 bits (100), Expect = 2e-12 Identities = 169/239 (71%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 1217358 GGCG-TGGCCTATTTGCACGGGCGCGA-CCGACCCATTGTGCACCGCGACCTCAAGAGCA 1217415 |||| |||| ||| ||||||| ||| | |||| || | ||||||||||||||| Sbjct 19422 GGCGCTGGCGTATCTGCACGGCCGCCAGCCGATT-ATCATCCACCGCGACCTCAAGTCGC 19364 Query 1217416 GCAACCTGTTGGTCGACGACAATTTCACGATC-AAGGTGGCCGACTTTGGCTTTGCCCGC 1217474 |||| || || ||||| || | || | ||| | ||||||||| | |||| Sbjct 19363 TCAACGTGCTGCTCGACAACCGGCTG-CGTGCGAAGCTCAGCGACTTTGGGCTCAGCCGC 19305 Query 1217475 ATCCGCGAGGACAATGCGACGATGACC--CGGTGCGG-CACGCCGGCGTGGACGGCGCCC 1217531 ||| || | | | ||||||||| ||| | || ||||| | ||||||||||||| Sbjct 19304 GAGCGCTCGGCCGACGACACGATGACCAACGGCGTGGGCACGCTGCTGTGGACGGCGCCC 19245 Query 1217532 GAGATCCTGCGCGGCGAGCGCTACTCGGAAAAGGCCGACATCTACTCTTTCGGCATCGT 1217590 |||||||||||||||||| ||| || ||||| ||| | ||||| | || |||||| Sbjct 19244 GAGATCCTGCGCGGCGAGACGTACAGCGAGAAGGCGGACGTGTACTCGTACGCCATCGT 19186 >seq815 Length=12602 Score = 89.7 bits (98), Expect = 8e-12 Identities = 159/227 (70%), Gaps = 14/227 (6%) Strand=Plus/Minus Query 1249584 TGCACGCGCTCGACCCGCCCGTCGTCCACCGCGATCTCAAGAGCAGCAACCTGCTGGTCG 1249643 ||||| || | || ||| || | ||||||||||||||| || ||| | ||| || Sbjct 1783 TGCACTCGTTGGAGCCGGTGGTGCTGCACCGCGATCTCAAGTCCATGAACATCCTGCTCA 1724 Query 1249644 AC---GACGAGTACAATGTCAAGGTGGCCGACTTTGGTCTCGCGCGCATCCGCGAGGACA 1249700 || |||| | | || |||| | | ||||||||| || |||||| | ||| Sbjct 1723 ACTCGGACGGGGA---TGCCAAGCTCACGGACTTTGGTGTCTCGCGCAAATG----GACG 1671 Query 1249701 ATGC-CACCATGACG--CGGTGCGG-CACGCCGGCGTGGACGGCGCCCGAGGTCATCCGC 1249756 || ||||||||| ||| | || ||||| | ||||| ||||||||||||||| Sbjct 1670 GTGGACACCATGACAGCCGGCGTGGGCACGCGGCGGTGGATGGCGCCCGAGGTCATGATG 1611 Query 1249757 GGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGATCGGCATCGT 1249803 ||| ||||||||||| |||||||| ||| |||| |||| |||| Sbjct 1610 GGCAAGCGCTACGACACAAGCGCCGACATCTTCTCGTTCGGTGTCGT 1564 Score = 86.0 bits (94), Expect = 1e-10 Identities = 170/244 (70%), Gaps = 21/244 (9%) Strand=Plus/Minus Query 1249571 GGCGTCG-CCTATCTGCACGCGCTCGACCCGCCCGTCGTCCACCGCGATCTCAAG---AG 1249626 ||||| | |||| || ||| |||||||||| || | |||||||| |||||| || Sbjct 3990 GGCGTTGACCTACCTCCACTCGCTCGACCCCAAGGTGCTGCACCGCGACCTCAAGTCGAG 3931 Query 1249627 CAGCAACCTGCTGGTCGACGACGAGTACAATGTCAAGGTGGCCGACTTTGGTCTCGCGCG 1249686 | || | ||||| ||| | ||| ||| |||| | | |||||||| |||| || Sbjct 3930 GAACATCTTGCTG-TCGCC--CGAACTGGATGCCAAGCTCTCGGACTTTGGGGTCGCCCG 3874 Query 1249687 CATCCGCGAGGACAA-TGC--CACCATGAC----GCGGTGCGGCACGCCGGCGTGGACGG 1249739 || | ||| | | || |||||| | |||| |||||| || |||| || Sbjct 3873 CA------AATACACCTTCAGCAGCATGACCGCAGGGGTG-GGCACGTCGCTCTGGATGG 3821 Query 1249740 CGCCCGAGGTCATCCGCGGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGATCGGCA 1249799 | ||||||||||| | |||||| || ||||||| |||||||| ||| |||| ||||| Sbjct 3820 CCCCCGAGGTCATGCTCGGCGACCGGTACGACGCCAGCGCCGACATCTTCTCGTTCGGCG 3761 Query 1249800 TCGT 1249803 |||| Sbjct 3760 TCGT 3757 >seq468 Length=22652 Score = 86.0 bits (94), Expect = 1e-10 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 2175306 GACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTT 2175365 || ||||||||||| |||||| || ||| |||||||| |||||||| ||||| ||||| Sbjct 8810 GATCCGTCGAGGTCCGGGTCGTTGATCAGACCCTTCCATCCGACGGTGGTGCGAGGCTTC 8751 Query 2175366 TCGACATAGGCGCGCATGAC 2175385 |||| ||| |||||||||| Sbjct 8750 TCGAAGTAGACGCGCATGAC 8731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915754417655375