Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq454 181 8e-41 seq397 84.2 2e-11 >seq454 Length=23305 Score = 181 bits (200), Expect = 8e-41 Identities = 441/662 (67%), Gaps = 11/662 (2%) Strand=Plus/Minus Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201 || || || ||||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 1914 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 1855 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261 |||| | ||| | || || |||| | ||| || || | |||||| || |||||| Sbjct 1854 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 1795 Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA 27321 || || || || || |||||||| |||| | |||||| | ||||||||| | ||| || Sbjct 1794 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 1735 Query 27322 TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 || ||||| || || || | ||||||||| || || ||||| | || || Sbjct 1734 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 1675 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 27438 |||||||| || ||| | ||| || | ||| ||||| | | | || | Sbjct 1674 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 1615 Query 27439 TCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGT 27497 ||| | ||| |||| ||||| ||| || | |||||| ||||||||| Sbjct 1614 ATCACCTCA----GCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTCCGT 1559 Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 |||| || || ||||| | ||| ||||| ||||| || ||||| ||||| ||| |||| Sbjct 1558 GTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTC 1499 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | || || || | |||||||| | |||| ||| || || |||||||||| | Sbjct 1498 GCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTG 1439 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 27677 | |||||| ||| | | | | ||| || || | ||||||||||||||| Sbjct 1438 AATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTC 1379 Query 27678 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA-ACTGTCCCT-T 27734 |||| | ||| | ||| || || | |||||||||||| || ||||| || || || | Sbjct 1378 CTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTCTCTCT 1319 Query 27735 GAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTCC 27794 || | | ||| ||| | |||||||| ||||| || |||||||| | |||||| Sbjct 1318 CAGACTGAACCGCATCTGTGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTCC 1259 Query 27795 CC 27796 || Sbjct 1258 CC 1257 >seq397 Length=25602 Score = 84.2 bits (92), Expect = 2e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 44827 TCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCG 44886 ||||||||| | || || ||||| | ||||||| | ||||| || | | ||| Sbjct 17839 TCCACCTCCTGCACCTCTGGGTACTCGATCTTCTCGAGAATAAGCTGCGCCACGCGGTCC 17780 Query 44887 CCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCC 44946 || | ||| ||| ||| | | | || ||| |||| || ||||| | |||||| Sbjct 17779 CCGCGCTTAACCGAGAAGTCTTCGGCCGCATGGTTGAACAAGATCACGCCCACGTTGCCG 17720 Query 44947 CTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCCG 45006 | |||||||| ||| | ||| ||||| || ||| || || || || || || || ||| Sbjct 17719 CGGTAGTCGGCGTCGATCACACCGGCGCCAGTGTCGATGAATTTCTTAAGTGCGAGTCCG 17660 Query 45007 GACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTTT 45066 || | || ||||| | |||| || | ||| | ||| |||||||||||||| Sbjct 17659 GAACGCGGCGCCACGCGCGCGTAACATCCAGCGGGAACGGCCACCACCAGGTCCGTCTTG 17600 Query 45067 ACCAGGGCCCTGCC 45080 || ||| || |||| Sbjct 17599 ACGAGGCCCTTGCC 17586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369486371918375