Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq179 86.0 5e-12 seq57 82.4 6e-11 >seq179 Length=43888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| || || || | |||| || Sbjct 11462 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 11521 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || |||| || | |||||| || || | ||| || ||||| Sbjct 11522 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 11581 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||||||| || || | | ||| | || |||||| || | ||| || || || Sbjct 11582 AATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTT 11641 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| || ||||| || ||||| Sbjct 11642 GCCCGTCAAAGTCTTCACAAAGATCTGCAT 11671 >seq57 Length=70295 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| || || || ||||||| Sbjct 19432 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 19491 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| || || | |||||| ||||| Sbjct 19492 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 19551 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||||| || || | | ||| | || ||||||| || | || ||||| || Sbjct 19552 GATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTT 19611 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || || || || ||||| Sbjct 19612 GCCCGTCAACGTCTTCACGAAGATCTGCAT 19641 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| || || || ||||||| Sbjct 19660 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 19719 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| || || | |||||| ||||| Sbjct 19720 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 19779 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||||| || || | | ||| | || ||||||| || | || ||||| || Sbjct 19780 GATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTT 19839 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || || || || || || || ||||| || Sbjct 19840 GCCCGTCAACGTCTTCACGAAGATCTGCATGTT 19872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414549224540404