Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq201 95.1 1e-14 >seq201 Length=40391 Score = 95.1 bits (104), Expect = 1e-14 Identities = 225/335 (67%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTC-GCAGAGCCGCTGGACGACGGCGCG 94146 |||||||||| |||||| | |||| | | |||| || || | || ||||||| Sbjct 27249 CCCCAGAGCAGGAACACGACGTTGGAG-GCGTCTTTGCTGATCTTGGAGATGACGGCGTC 27191 Query 94147 CACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCAG 94206 || | || |||||||| || ||| ||| || | || || || || || || Sbjct 27190 GGTGAACTGCTCCCAGCCGCGCTTTTTGTGCGAGTTGGCCTCACCTCGACGGACCGTGAG 27131 Query 94207 CGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGG 94266 | |||||| || |||||||| || |||| |||| ||| |||||||| | ||| Sbjct 27130 CACCGTGTTGAGTAGCAGCACTCCCTGGCGGCTCCAGCAGGACAGACAGCCGTGCGAGGG 27071 Query 94267 -CGCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGG 94324 |||| | || ||||| | | | || || | |||| || ||||||||| Sbjct 27070 GCGCGAGATGCCC-----ACGTCACTCATGGCCTCCTTGTAGATATTCTTCAGGCTCGGC 27016 Query 94325 GGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGG 94384 || | | | ||| | || ||| |||| ||||||||| ||||| |||||||||| Sbjct 27015 GGCGGCAGGATGCCGTGACGCACGGAGAAGCTCAGCCCGTGCGCCTGTTGCGGCCCGTGG 26956 Query 94385 TACGGGTCCTGGCCGATGATGACCACCTTGACGTC 94419 ||||||||||| || | || |||||||||| ||| Sbjct 26955 TACGGGTCCTGCCCTAGAATCACCACCTTGAGGTC 26921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458920431904560