Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq196 235 5e-57 seq57 150 2e-31 seq179 123 2e-23 seq1068 104 2e-17 seq48 96.9 3e-15 >seq196 Length=41935 Score = 235 bits (260), Expect = 5e-57 Identities = 950/1469 (65%), Gaps = 38/1469 (3%) Strand=Plus/Plus Query 145030 CTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACG 145089 || ||||| || | || | ||||| || |||| | ||||| || |||| ||| || Sbjct 19671 CTCGATCAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCG 19730 Query 145090 ACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGC 145149 || |||| ||| |||||| | || || | ||||| || ||||||| || ||||| Sbjct 19731 GCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGC 19790 Query 145150 GGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGAT 145209 |||| || |||||||| ||||| | | || ||||| | ||||||||| | | Sbjct 19791 CGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCAC 19850 Query 145210 GTCTTCCTTTAGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTC 145266 || ||||| |||| | |||||||||| | ||||| ||| | ||| |||||||||| Sbjct 19851 GTTCTCCTTGAGCGCAGCCCAATCCCACAAGCCCGAAGACGGGGTGACGCCCCACATGTC 19910 Query 145267 GTACTGCAAAATGCCCTCGCTGGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAG 145325 | |||| || || |||| |||||| || | | ||| ||| | || || | |||| Sbjct 19911 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACG--TCTCGTACGGGCCCAGC 19968 Query 145326 T-TTTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTG 145383 | ||||||| ||| || | | ||||| || || | || || |||||| || | Sbjct 19969 TCCTTGGCGATCTC-CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 20027 Query 145384 CCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCAT 145442 | ||||||| |||| ||||||| || |||| | || || | ||| |||| Sbjct 20028 CATGTTGAGTTCACGGGCTTGCGGGCTCTCGAAC-GCATAGTTCATGAGGATAAATGCAT 20086 Query 145443 CGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCG 145502 | ||||| ||||| | || | || | || || || ||||||| | | | |||| Sbjct 20087 CCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCT 20146 Query 145503 ACTCGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTT 145561 ||| | || || | | | || ||| || | || |||||||| || || ||||| Sbjct 20147 CCTCCACGGGGTAGTAGTTGAC-GTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTG 20205 Query 145562 GTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTG 145621 || | | || ||| | ||| ||| ||| || | ||||| | | | Sbjct 20206 GTCACCTCGTACAGCTTCTGGTAGTTGAAC----ACTC--CATCCTCCACAAACTTGGGG 20259 Query 145622 ACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGAT 145680 | ||| | ||||||| || || || ||| ||| || |||| || |||| | | || Sbjct 20260 AGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAAT 20318 Query 145681 CTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT 145740 |||| |||||| ||||| | ||| || || || || ||||| || || | ||| Sbjct 20319 CTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 20378 Query 145741 GCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--A 145798 | |||||||||||| |||||| |||| | || ||||| | ||||| |||| ||| Sbjct 20379 GGCCGCGTCCTTGTACAGCATGAACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGC 20438 Query 145799 AAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTC 145858 ||| || | ||| ||| | | || | ||| ||||| | ||||| ||| Sbjct 20439 GAAC--CACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTC 20496 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 ||| || ||| ||| || || |||| ||| | || ||||| || ||||| Sbjct 20497 TCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGG 20556 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | || ||| |||||| || | || |||| ||| |||| ||| || |||||| Sbjct 20557 CAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCAC 20616 Query 145979 AGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAA 146034 || ||||| | | || ||||||| |||| ||| | || || ||| || || Sbjct 20617 AGAGCGTAGAAGAGGTCGCGCGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTGC-GCAG 20672 Query 146035 ATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTT 146093 | || | ||| | | ||| ||||||||||| || | |||| ||||| | |||| Sbjct 20673 CTCCAGGA-ACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTT 20731 Query 146094 TTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGG 146150 | || ||| || ||||||||||| | || || ||| || ||||| | || ||||| Sbjct 20732 TGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGG 20791 Query 146151 GCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGC 146210 | || ||| ||| | |||||||| | || | || || ||| | | Sbjct 20792 GGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGT 20851 Query 146211 AATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCG 146270 || | | | ||| | ||| ||| | ||||||| || ||||| | ||||| Sbjct 20852 TGTGCATGCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCG 20911 Query 146271 TCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCT 146330 | ||||| ||||| ||||| ||| | ||| | ||||| || ||||| ||| || Sbjct 20912 TGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCT 20971 Query 146331 GCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGC 146390 ||| |||||| || || || | ||| || ||||||||||||| | | | Sbjct 20972 GCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTG 21031 Query 146391 TCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGA 146450 ||| | | |||||| | | || | || ||||| | ||||| |||| || | Sbjct 21032 ACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCA 21091 Query 146451 CGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 ||||||||| ||| || ||||| |||||| Sbjct 21092 CGCGCATGATCATCTGCTGGGGGCGCTCC 21120 >seq57 Length=70295 Score = 150 bits (166), Expect = 2e-31 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| || || | || |||||||| || |||||||| ||||| Sbjct 19642 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 19701 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 19702 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 19761 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| |||||||||||| | | || | | || | | ||| | Sbjct 19762 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 19821 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTAT 131246 ||| | || | ||| || || || | || || ||||| ||||||||| || ||||| Sbjct 19822 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG--TTCTTTTAG 19879 Query 131247 TC 131248 || Sbjct 19880 TC 19881 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| || || | || |||||||| || |||||||| |||||| Sbjct 19415 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19474 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 19475 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19534 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||||||||| | | || | | || | | ||| | | Sbjct 19535 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 19594 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || | || || ||||| ||||||||| Sbjct 19595 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19642 >seq179 Length=43888 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| |||||| Sbjct 11445 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11504 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 11505 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 11564 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||||||| | | || | | || | | ||| | | Sbjct 11565 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 11624 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || || || | ||| || || || ||||||||| Sbjct 11625 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 11672 >seq1068 Length=8813 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 3775 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3716 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || || || ||||| ||||| |||||||||||||| | | Sbjct 3715 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 3656 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 3655 CAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 3596 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 3595 AGATCTGCATGA 3584 >seq48 Length=75260 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| ||||||||||| || Sbjct 35363 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 35422 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 35423 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGG 35482 Query 131128 ATTCCT 131133 |||||| Sbjct 35483 ATTCCT 35488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471985269853440