Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1068 120 7e-22 seq179 120 7e-22 seq57 114 3e-20 >seq1068 Length=8813 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 3773 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3714 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | || || ||||| || |||||||||||| || || || || Sbjct 3713 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3654 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || ||||| || |||||||| ||||| || ||||| ||||| || || Sbjct 3653 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 3594 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 3593 ATCTGCATGAT 3583 >seq179 Length=43888 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| |||||||| | || || || ||||| Sbjct 11481 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAA 11540 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || | ||||| ||||| || ||||| |||||| |||||||| Sbjct 11541 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTG 11600 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || | ||||||||||| || |||| |||||| || Sbjct 11601 TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACA 11660 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11661 AAGATCTGCAT 11671 >seq57 Length=70295 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 19451 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 19510 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || || ||||||||| |||||||| Sbjct 19511 ATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG 19570 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || |||||||| ||||| || |||| ||||| ||| Sbjct 19571 TCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACG 19630 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 19631 AAGATCTGCAT 19641 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 19679 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 19738 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || || ||||||||| |||||||| Sbjct 19739 ATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG 19798 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || |||||||| ||||| || |||| ||||| ||| Sbjct 19799 TCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACG 19858 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 19859 AAGATCTGCAT 19869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179583876573548