Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq385 152 1e-31 seq3489 104 5e-17 >seq385 Length=26823 Score = 152 bits (168), Expect = 1e-31 Identities = 424/639 (66%), Gaps = 31/639 (5%) Strand=Plus/Plus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||| | || || || |||||||| |||||||||| | | ||||| Sbjct 13649 CTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGCGTC---TCGTA 13705 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || || || ||| || |||| ||||||||| || |||||||| ||||| || | || Sbjct 13706 GTGAATGATGTTGGTACAGACAGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGCT 13765 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 || |||| | ||| | ||||||| | |||||| ||||| ||| | Sbjct 13766 CGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCCAA 13825 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 |||||| |||||||| ||||| || || | | || ||| | ||||| ||||| ||||| Sbjct 13826 ATGGTTCGTCGGCTCATCAAGGAGCAGGATGTCAGCCTTCTGCAGCATGGCACGAGCAAG 13885 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 334021 | |||||||| ||||| || || ||||| || | || ||| || || Sbjct 13886 CTCAAGTTTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGCAT 13939 Query 334022 ATCA------AAGCCAACCGATTCTAGAGTAGTTACG-ATCTTTTCACGAGACCAAATGT 334074 || ||||| || | | || || || || | || || |||| | ||| Sbjct 13940 CTCCGGGGTGAAGCCCACGCTTCCGAGCGT-GTCACACACCTCGTCGCGAGG---AGTGT 13995 Query 334075 T-TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 | ||| | || | || || || |||||||| | | | || | || ||||| Sbjct 13996 TCTTCAGGTCCTCATCCACCA--GG--ATGAAGTCCACCACGGACAACTCAGCCTCGGAA 14051 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCCTT 334191 | | || | ||| || ||| | |||| |||| | | | || | ||||| || | Sbjct 14052 GCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGAGCGGCTG--GGGAAGCCCT 14109 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||||||||| ||||||||||||||||| || ||||| ||||| || || | Sbjct 14110 CGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGC 14169 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAA-CCGCGTATTGTTCAGAAGAATTTTT 334310 |||||||||| |||| |||||||||| | ||| || | |||||||| ||||| | Sbjct 14170 ACAGACCGTAACGGTGGCCACGCTTCA-AGCGAAGGCGGGCGTTGTTCAGCAGAATCATA 14228 Query 334311 CCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 ||||| || || || || ||||| || | ||||| ||| Sbjct 14229 CCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 14267 Score = 93.3 bits (102), Expect = 9e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||| | ||| ||| || Sbjct 13241 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAG 13300 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| ||||| || || | |||||| || || Sbjct 13301 GTGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTG 13360 Query 333434 CTTCCAAAC 333442 |||||| || Sbjct 13361 CTTCCACAC 13369 >seq3489 Length=1496 Score = 104 bits (114), Expect = 5e-17 Identities = 272/410 (66%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || ||| | || || || |||||| ||||||| ||||| ||| || Sbjct 839 CGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 898 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||| || | | || |||||| ||||||| || ||||||||| | ||| Sbjct 899 CCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACAC 958 Query 243438 ACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTC 243495 | |||| ||| || ||||| || ||| | ||||||||| || || || || Sbjct 959 GGACTTCGCGTGC-CTCATGTACTCGAAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTG 1016 Query 243496 AAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 | ||| | || || || | | || | || ||| | ||||| | | || Sbjct 1017 CACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC 1076 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 ||| || ||||||||||||| |||||| | ||||||||||| ||||| |||||| Sbjct 1077 GTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGAC 1136 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | | | | || ||| || | |||||| |||||||| || | || Sbjct 1137 CGCCTGCTGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGG 1196 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| ||||| || Sbjct 1197 ATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 1246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102814066387100