Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq793 100 1e-16 >seq793 Length=12582 Score = 100 bits (110), Expect = 1e-16 Identities = 381/597 (64%), Gaps = 21/597 (4%) Strand=Plus/Plus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| |||||| || || ||| | |||||| || | Sbjct 7159 CGAGTGGTGGAGATCTACGGCCCTGAGAGCTCTGGCAAGACGACGTTGGCACTGAGCTGC 7218 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | || || ||| ||| ||| | |||| |||||| || || || || Sbjct 7219 ATTGCGGAGGCTCAAAAGACCGAGGGCGGGGTGTGTGCCTTCATCGATGCTGAGCACGCT 7278 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | || | | |||||| ||| || || || || | ||| || || |||| Sbjct 7279 ATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 7338 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | || || | || ||||| |||| ||| ||| || ||||| | ||| Sbjct 7339 CCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGACACGCTCATCCGATCTGGAGCGGTG 7398 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTG---------GTGCCGCGGGCGGAGCTC 66260 | || | || ||||| ||||||||| || |||||||| || ||||| Sbjct 7399 GACCTCGTGGTGCTGGACAGTGTGGCGGCACTTNNNNNNNNTGTGCCGCGTGCCGAGCTT 7458 Query 66261 GAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATG 66320 || || || || || ||| ||| | | ||||| || || | ||| || || || Sbjct 7459 GAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTAATGAGCCAAGCTCTG 7518 Query 66321 CGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTG 66380 |||||||| || || || | ||| ||||| || | | |||| ||| | Sbjct 7519 CGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATC 7578 Query 66381 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCT 66440 ||| ||||| | |||| | || ||| | |||| ||| | ||||| | || Sbjct 7579 CGCCAGAAGGTGGGCATTAT---CTTCGGATCTCCTGAGGTCACGTCGGGTGGCACAGCG 7635 Query 66441 CTGCGCTTCTACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAA 66497 |||||| ||||| || ||||| |||| | ||||| || || | | |||||| Sbjct 7636 TTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAGACGGCTATC---AAGGAA 7692 Query 66498 GGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 66554 ||||| || |||||||||| ||| ||||||||| | |||||||||||||||| Sbjct 7693 GGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAGAACAAGCTGGCG 7749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242456611466072