Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq322 98.7 8e-16 seq201 95.1 9e-15 >seq322 Length=29691 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| |||||||| || Sbjct 17941 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGACCGC 18000 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| |||||| || | | Sbjct 18001 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTCCTGGTCAA 18060 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | ||| || |||||| Sbjct 18061 GAAGGACCCCAAGGTGGTCAAGGCCGG 18087 >seq201 Length=40391 Score = 95.1 bits (104), Expect = 9e-15 Identities = 180/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || | ||| | ||| | ||||| Sbjct 20964 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTCTGGTCGCACCGCGGGTACAA 20905 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | |||||||| ||| ||| |||| |||| || || Sbjct 20904 GGCCAAGCTGCCGCTGCGCGTGTTCCTCATGCTGTGCAACTCGATGGCCTTCGAGGGTAC 20845 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| | ||| || ||| ||| | || ||||||||| ||| |||||||||||||| Sbjct 20844 CATCTTCGATTGGTCGCGCGACCACCGCGTGCACCACAAGGGCTCGGACACGACGGCCGA 20785 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 20784 CCCGCACAACTCGGAGCGCGGCCTCTTCTTCTCGCACATGGGCTGGATCATGGTGCGCAA 20725 Query 108576 GGACCCCGACGTGATCTCGGCCGGT 108600 | || ||||| | |||||||| Sbjct 20724 GCACAAGAACGTGCGCGCGGCCGGT 20700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381751089773904