Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3489 109 7e-19 seq364 86.0 8e-12 >seq3489 Length=1496 Score = 109 bits (120), Expect = 7e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 840 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 899 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 900 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 949 >seq364 Length=27886 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 176891 GCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCA 176950 |||||||| || ||| | || || |||||||| || |||||||| ||||| || ||| Sbjct 15323 GCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCGTACTGATCACGTCCA 15264 Query 176951 ACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCA 177002 ||||| | ||||| || || || || | || |||||||||||||| |||| Sbjct 15263 ACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCCTCAGTCA 15212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620706195199520