Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3489 228 2e-54 seq196 183 6e-41 >seq3489 Length=1496 Score = 228 bits (252), Expect = 2e-54 Identities = 563/849 (66%), Gaps = 23/849 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || |||||| ||||| ||| | || |||| Sbjct 420 TGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 479 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || | | |||| || | | |||||| || || ||||| ||||| Sbjct 480 CACGACCTGAAGGACTGGGGGAACCTGACGGACAACGAGCGCCACTTCATCAAGCACGTG 539 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATTCAC 25658 | |||||||| || ||| || || || ||||||||||| ||| |||| || |||| Sbjct 540 CTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTG-GCGATGAACTTCAG 598 Query 25659 CAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAA 25717 || || |||| ||| | |||||| || |||||||| |||||||| |||||||| | Sbjct 599 CAATGAGGTGCAAGTGC-CGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGA 657 Query 25718 ATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCG 25774 | | ||||| |||||||| | ||| ||||| |||||||| | |||| || | Sbjct 658 ACATCCACTCGGAGGTGTA---CTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGG 714 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 ||| |||| || | ||||||||||| || || || | ||| |||||| || | Sbjct 715 AGAAGGATCACTTGCTGCGTGCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCT 774 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC---GAGCGGCTGGTAGCCT 25891 |||| | |||||| | || | | | ||| | ||||| ||| | || | Sbjct 775 GGGCGCTCAAGTGGTGTGA---CCCTCGTGTTTCGTCCTACCCGGAGCGTCTGCTGGCGT 831 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 | || || ||||||||||| || ||| ||||| || ||| ||||||||||||||||| Sbjct 832 TCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGC-TCCATCTTCTGGCTCAAG 890 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| || ||| ||| || ||||||||||||||| |||||||||| Sbjct 891 AAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGC 950 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 | |||| || || || ||||| | ||| || | ||| | || || || | | Sbjct 951 ATGCACACGGACTTCGCGTGCCTCATGTACTCG---AAGTTGGTGAAC-AAGCTGCCGGA 1006 Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 ||| | ||| || ||| | || ||||||| ||| ||| | ||||| Sbjct 1007 GAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGA 1066 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| |||||| |||| ||||| |||| Sbjct 1067 CTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTT 1126 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249 |||||||||| ||||||| | ||||| ||| |||||| | ||||| Sbjct 1127 CGTGGCCGACCGCCTGCTGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCC 1186 Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 |||||||| ||||| | || ||| || | || |||||||||||||| || ||| | || Sbjct 1187 GTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 1246 Query 26310 CGGCGACTA 26318 ||||| || Sbjct 1247 GGGCGAGTA 1255 >seq196 Length=41935 Score = 183 bits (202), Expect = 6e-41 Identities = 808/1266 (64%), Gaps = 41/1266 (3%) Strand=Plus/Plus Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 ||||| |||||| ||||| ||||| || |||||||| || || || | | | | | Sbjct 20001 AGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGT-TCACGGGCTTGCGGGCTCTCGA 20059 Query 221485 GGGCATACG-CAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 ||||| || | ||| | || || || ||||| || || ||||| | || | Sbjct 20060 ACGCATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGC 20119 Query 221544 TGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGAT 221603 ||| | | ||||||| | ||| || |||||| || |||||||||| || | | Sbjct 20120 GGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCT 20179 Query 221604 TGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCA 221663 |||| | |||| | || | || || ||||||| ||||||||||| |||||||| Sbjct 20180 TGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAACACT- 20238 Query 221664 ACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTAC 221723 || || | ||||||| | ||||| || |||||||| | Sbjct 20239 --------CCATCCT---------CCACAAACTTGGGGAGGGCCACAGACGCCAGGTTGC 20281 Query 221724 ACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACT 221783 |||| |||||||| || || |||| || ||||| || | |||||| | Sbjct 20282 ACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGTTGCTCGAGC 20341 Query 221784 TGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAA 221843 ||| || || |||| | || || |||||||| ||||| ||||||||||| ||||| | Sbjct 20342 GGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGA 20401 Query 221844 AGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCA 221903 | || | || ||||| | ||| || |||| || | ||| || | ||| | | Sbjct 20402 ACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCATTGA 20461 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGAGCATGTCAAACTT 221961 |||| ||| || | | | ||| || ||| | ||| |||| | || |||| Sbjct 20462 TCGTC---TTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAG--TCTCGAACTC 20516 Query 221962 TTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTT 222021 || || | ||||| || || || | ||| || | || ||||| | Sbjct 20517 GTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCC 20576 Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 ||| ||| || | || |||||| || || |||| |||||| || | ||||| || | Sbjct 20577 GTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCG 20636 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 | || ||| ||| ||||| ||| || | ||| |||| ||||| || | |||||| Sbjct 20637 CGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCAGC 20696 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 ||||||||||||||| |||| ||| | | ||| |||||| || ||||| ||||| Sbjct 20697 GTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCAC 20756 Query 222202 CATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTT 222261 | || | ||||||| | || | || | | ||||||||| ||||| Sbjct 20757 ATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTT 20816 Query 222262 GGTGCCCTTAATGTA-CGCACCGCCGGCCCTCAGGTTACTGGCAGAC--ATGCCGATACC 222318 ||||| ||||| | || ||| | | ||| ||| | ||||| ||||| Sbjct 20817 CGTGCCGCGGATGTAGCTGTTCG-TGGCGCGGATGTT--GTGCATGCTAATGCCAATACC 20873 Query 222319 ACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGA 222378 ||||| || ||||| ||||| |||||| ||||| |||||||| || || Sbjct 20874 TCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGA 20933 Query 222379 GTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTT 222438 ||| |||| | | |||||| ||||| ||||||| ||| | | | | |||||| Sbjct 20934 GTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGGCGTT 20993 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCT-CTA 222497 ||| |||||||| | ||||| |||||| | | ||||| || || ||||| | | Sbjct 20994 AAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATACGTGTGCAG 21053 Query 222498 CGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGG 222557 | | | | ||||| | | |||||| || || | |||| ||| | ||||| Sbjct 21054 TGCCGCCTG-GATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCATCTGCTGGG 21112 Query 222558 GCCTCTCCACAGGACCCTTGGAGCT---GGAGAGCAGGTACGATTTTTCCAGAGTCTTGA 222614 | | |||||| || |||| | | | || ||||| | || || ||||||| Sbjct 21113 GGCGCTCCAC--GA-CCTTACCGTTCACGCGGAAGAGGTAGCCTCGCTCAAGCGTCTTGA 21169 Query 222615 ACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGACT 222674 | || ||||||| | |||||||| | | |||| | | ||| | || ||||| || Sbjct 21170 AGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCCGAGTTAAGCTCGTCCT 21229 Query 222675 TGTGCT 222680 |||||| Sbjct 21230 TGTGCT 21235 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 221049 CCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCA 221108 ||| || || | | |||| ||| |||||| | ||| ||| |||| |||| | | Sbjct 19631 CCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGA 19690 Query 221109 TGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAG 221168 || ||||||||| | ||| || || | ||||| | | | ||||| ||| || | Sbjct 19691 GGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACG 19750 Query 221169 TGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGG 221228 || |||| |||||| ||| |||||||||| ||||||||||| || |||||||| | Sbjct 19751 TGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCG 19810 Query 221229 GTGCCACCAGCAGACTGTTGCG 221250 | ||||| || || |||||| Sbjct 19811 GAGCCACGAGGAGCGAGTTGCG 19832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928790625127040