Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq179 91.5 1e-13 >seq179 Length=43888 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||||| || ||||| || || ||| | || |||| | Sbjct 11671 ATGCAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 11612 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || || || ||| || || |||||| | || || ||| Sbjct 11611 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 11552 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || ||||| || |||| | || || ||||||||| Sbjct 11551 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAAC 11492 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG-GGGAAATAAT 107789 || || |||||||||||| ||||| ||||| || | |||| || || || |||| Sbjct 11491 ATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGTAACTAAT 11437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398854117122874