Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_023689.1 Length=76260 Score E Sequences producing significant alignments: (Bits) Value seq793 122 4e-23 >seq793 Length=12582 Score = 122 bits (134), Expect = 4e-23 Identities = 331/506 (65%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 66331 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66390 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 7255 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 7314 Query 66391 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66450 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 7315 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 7374 Query 66451 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTG--- 66507 ||| || ||||| | | || | |||| || | ||| ||||||||| || Sbjct 7375 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTNNN 7434 Query 66508 ------GTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCAC 66561 |||||||| |||||||| || ||||| || || ||| || | | ||||| Sbjct 7435 NNNNNTGTGCCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAG 7494 Query 66562 GCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC--- 66618 ||||| | ||| || || ||||||||||||| || | | |||| ||||| Sbjct 7495 GCGCGATTAATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGC 7554 Query 66619 ACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCG 66678 || | | ||| | |||||| | ||| ||||| | |||| | || ||| | Sbjct 7555 ACCATTA---TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCATTAT---CTTCGGATCT 7608 Query 66679 AACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTC 66738 ||| ||| |||| |||| || ||| | | ||||| || || ||| |||| | Sbjct 7609 CCTGAGGTCACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATT 7668 Query 66739 CGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAG 66798 || |||| | | ||||||||||| || |||||||||| || |||||| Sbjct 7669 CGCCGCAAGACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAG 7728 Query 66799 GTCGTCAAGAACAAGCTGGCCCCGCC 66824 || | ||||||||||||||| |||| Sbjct 7729 GTGGCCAAGAACAAGCTGGCGTCGCC 7754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243893329759746