Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq793 123 1e-23 >seq793 Length=12582 Score = 123 bits (136), Expect = 1e-23 Identities = 332/507 (65%), Gaps = 18/507 (4%) Strand=Plus/Plus Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301 ||||| |||||| ||||||||| | | || | | ||||||||||| || ||||| || Sbjct 7254 TGCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGA 7313 Query 66302 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66361 | | ||| || || ||||||||| | || || | || ||||| |||| || Sbjct 7314 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGA 7373 Query 66362 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTG-- 66419 | ||| || ||||| | | || | |||| || | ||| ||||||||| || Sbjct 7374 CACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTNN 7433 Query 66420 -------GTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCA 66472 |||||||| |||||||| || ||||| || || ||| || | | ||||| Sbjct 7434 NNNNNNTGTGCCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCA 7493 Query 66473 CGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC-- 66530 ||||| | ||| || || ||||||||||||| || | | |||| ||||| Sbjct 7494 GGCGCGATTAATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTG 7553 Query 66531 -ACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCC 66589 || | | ||| | |||||| | ||| ||||| | |||| | || ||| | Sbjct 7554 CACCATTA---TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCATTAT---CTTCGGATC 7607 Query 66590 GAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGT 66649 ||| ||| |||| |||| || ||| | | ||||| || || ||| |||| | Sbjct 7608 TCCTGAGGTCACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACAT 7667 Query 66650 CCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAA 66709 || |||| | | ||||||||||| || |||||||||| || ||||| Sbjct 7668 TCGCCGCAAGACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAA 7727 Query 66710 GGTCGTCAAGAACAAGCTGGCCCCGCC 66736 ||| | ||||||||||||||| |||| Sbjct 7728 GGTGGCCAAGAACAAGCTGGCGTCGCC 7754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240946297357800