Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq57 156 1e-32 seq179 152 1e-31 seq1091 122 2e-22 seq1068 120 7e-22 >seq57 Length=70295 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || | ||| || || || || || |||| ||||| ||| || || Sbjct 19421 CGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 19480 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 19481 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCC 19540 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||||||||| || |||||||| ||||||| ||| || | |||||||| | | Sbjct 19541 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGC 19600 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||||||||| || || | ||| | ||||| Sbjct 19601 GTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19641 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| || || || || || |||| ||||| ||| || || Sbjct 19648 ACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 19707 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 19708 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCC 19767 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||| || |||||||| ||||||| ||| || | |||||||| | Sbjct 19768 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAG 19827 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||||||||||||| || || | ||| | ||||| || Sbjct 19828 CGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 19872 >seq179 Length=43888 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 11450 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 11509 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||| || || || || ||||| ||||| || || Sbjct 11510 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 11569 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || |||||||| ||||| | ||| || | |||||||| || Sbjct 11570 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 11629 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||||||||||||||| || Sbjct 11630 GGTGATCGTCTTGCCCGTCAAAGTCTT 11656 >seq1091 Length=8627 Score = 122 bits (134), Expect = 2e-22 Identities = 199/281 (71%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTATATTTTCTATGAT 7499 || |||||||| || |||| ||||| || ||||| || |||| ||||| | | Sbjct 473 ACTTTATATTTGATTTTTGCATTATTTTCAGG-ATTATTGGGTACTGCTTTTTCAGTTTT 531 Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 || || |||||| |||| || || ||| ||| || | || |||| |||| | | Sbjct 532 AATTAGATTAGAACTTAG-TGGACCAGGTGTTCAG---TTTATAGGAAATAACCAATTAT 587 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || |||| |||| || ||||| | | ||||| |||||| | |||||||| | | Sbjct 588 ATAATAGTATTGTTACAGCTCATGCTATACTAATGATATTCTTTATGGTTATGCCCGCTT 647 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| || || || |||| || | || |||||| | |||| |||||||||||| | Sbjct 648 TAATAGGGGGATTTGGTAATTTCTTAATGCCATTAATGGTAGGTGGTCCTGATATGGCAT 707 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || || | || ||||| |||||||||||| |||| ||| Sbjct 708 TCCCTAGATTAAATAATATTAGTTTTTGATTATTACCTCCT 748 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||| |||||||| | |||||| | | |||||||| || || |||| Sbjct 1153 TTCAGGATGTCCAAAGAATCAGAAAAGGTGTTGAAATAATATAGGATCTCCACCTCCTGC 1094 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | ||||| || |||||||||||||||||| ||||| Sbjct 1093 TACTTCAAAGAATGAAGTATTAAAATTTCTATCTGTTAA 1055 >seq1068 Length=8813 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| |||||||| |||||| Sbjct 3743 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCC 3684 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | || ||||| | |||| Sbjct 3683 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCTACGTCCAGCGTG 3624 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 3623 ATGGTCTTGCCCGTCA 3608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192459906758204