Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq336 141 2e-28 seq3253 113 1e-19 seq18 111 3e-19 >seq336 Length=29666 Score = 141 bits (156), Expect = 2e-28 Identities = 677/1060 (64%), Gaps = 57/1060 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||| | ||| ||| || Sbjct 14444 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAG 14385 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| |||||||||||||| ||||| ||||| || || | |||||| || || Sbjct 14384 GTGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTG 14325 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || | |||| || | | ||||| |||| || || | ||| Sbjct 14324 CTTCCACACCTGGCCACTCGTGGGCTCAACCTCACCCGTCAGCATTTTGATCATGGTCGA 14265 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGG-------AGTTCAGCGATACCT 319222 || || |||||||| || | ||| |||| | | || || || ||| Sbjct 14264 CTTTCCGGCACCGTTGGGTCCAAGCACGGCGATACGGCTCGACAAAGCGCA-CGTCACC- 14207 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | | | |||| || | | | || || || || |||| | || ||| Sbjct 14206 --GAAATGTTGTTGATCGACG----GCTTCGGGGTGCCAGGGTACTGGTACGA-ACAGTT 14154 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 ||| || ||||||| |||| |||| | | ||||| |||||||| || Sbjct 14153 CGTCAGACGAATGATGGGTTTACCCTTGTTCTTGATGTCGGCAAGGAAACCGGGCTCCGG 14094 Query 319341 GAACTTC-----CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||| | ||||| ||| | ||| || ||||||| | | || || Sbjct 14093 GAACGTGAACTTCACGTTGTCA--GACTCC---AGCTCGTAGTAGGCCTTGGCCTCAGGC 14039 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || || |||||| | || || || |||||||| |||||||||| | | ||| Sbjct 14038 TTCTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGCGTC---TCG 13982 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || || || || ||| || |||| |||||||||||| |||||||| ||||| || | | Sbjct 13981 TAGTGAATGATGTTGGTACAGACAGTGTCGAGGAACCCAGAGTCGTGCGACACCATGATG 13922 Query 319516 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAA 319575 | || |||| | ||| | ||||||| | || ||| ||||| ||| Sbjct 13921 CTCGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCC 13862 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | |||||| |||||||| ||||| ||||| | | || ||| | ||||| ||||| ||| Sbjct 13861 AAATGGTTCGTCGGCTCATCAAGGAGCAGGATGTCAGCCTTCTGCAGCATGGCACGAGCA 13802 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 319695 || | |||||||| ||||| || || ||||| || | || ||| || Sbjct 13801 AGCTCAAGTTTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGC 13748 Query 319696 ATATC------AAAGCCAACCGATTCTAGAGTAGTTAC-GATCTTTTCACGAGACCAAAT 319748 || || ||||| || | | || || || || | || || |||| | | Sbjct 13747 ATCTCCGGGGTGAAGCCCACGCTTCCGAGCGT-GTCACACACCTCGTCGCGAG---GAGT 13692 Query 319749 GTT-TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGG 319807 ||| ||| | || | || || || |||||||| | | | | | || |||| Sbjct 13691 GTTCTTCAGGTCCTCATCCACCA--GG--ATGAAGTCCACCACGGACAACTCAGCCTCGG 13636 Query 319808 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCC 319865 | | | || | ||| || ||| | |||| |||| | | | || |||||| || Sbjct 13635 AAGCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGAGCGGC--TGGGGAAGCC 13578 Query 319866 TTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCC 319925 || ||||| ||||| |||||||||||||| || || ||||| ||||| || || Sbjct 13577 CTCGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCC 13518 Query 319926 ACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTT 319985 ||||||||||| |||| || || |||| | | || | ||||||||| ||||| | Sbjct 13517 GCACAGACCGTAACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGCAGAATCAT 13458 Query 319986 TCCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||||| || || || || ||||| || | ||||| ||| Sbjct 13457 ACCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 13418 >seq3253 Length=1618 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 291 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 350 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 351 CCCACGGTGGGC 362 >seq18 Length=94768 Score = 111 bits (122), Expect = 3e-19 Identities = 606/943 (64%), Gaps = 37/943 (4%) Strand=Plus/Minus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| ||||| | | ||| ||||| | |||||||||||||||| ||| | ||||| Sbjct 1603 GTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTG 1544 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 ||| | ||||| | ||| ||| ||| | |||||| | ||| || | | Sbjct 1543 GACGGCCGAGGAGCTGGACCTGGT-GCACGACCTGAAGGACTGGGG---GAACCTGACGG 1488 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || |||| || || |||||||| ||| | |||| || ||||| | | ||| || || | Sbjct 1487 ACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCG 1428 Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 229996 ||| || || ||| || ||||| || || || || || ||||| || | Sbjct 1427 TGAACGAGAACCTGGCGATGAACTTCAGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCT 1368 Query 229997 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCG 230056 | || | | ||| | || ||| ||||| || || || | ||||| |||| Sbjct 1367 TCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCG 1308 Query 230057 ACGCGCTTATTTC-----CGACGAGCAAGAACGGAACGAGCTTTTTGA-TGCCATTGAAA 230110 || || || || || || | | ||| ||| | ||| || |||||| || | Sbjct 1307 ACACG--TACATCAAGGACGCCGTGGA-GAA-GGATCA--CTTGCTGCGTGCCATCGAGA 1254 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 |||||| || | || ||||| ||||| | || ||| || ||| || | Sbjct 1253 CGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTT 1194 Query 230171 CGTT-TGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 ||| | || |||||||| | || | | || || || ||| | || || || Sbjct 1193 CGTCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTT 1134 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 |||||| ||||||| ||||| ||| || | |||||||| || | | || | Sbjct 1133 CCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGA 1074 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCA 230346 ||||| ||||||| || |||||||| | || | |||| || || | ||||| || Sbjct 1073 ACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCCTCATGTACTCG 1015 Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGA 230405 ||| | ||||||||| || ||| || || | ||| | || || || | Sbjct 1014 AAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGT 956 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTG 230464 | || | |||||| | | ||| | | || || | || || ||||||||| ||| Sbjct 955 GATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC-GTGGAGCTGATCGGCATGAACTCTG 897 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT---T 230521 || ||| | ||||||||||| ||||| ||||||||| | | |||| ||| | Sbjct 896 CGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGTGCAT 837 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 | ||| | |||||| |||||||| || | | ||||| | || ||||| || | Sbjct 836 CCAAGA---TCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGG 780 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGT-GATGAA 230639 | ||||||||||||||||| ||||| || | || || || ||| ||||||| | || Sbjct 779 GCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACTCCAAGG-CTGGTGTGGGTGTC 721 Query 230640 GC--CCGAAGACAATATTTTTGCTATTGACGATGATTTTTAAG 230680 || |||| ||| | | || || | |||| || ||||||| Sbjct 720 GCGGCCGAGGACCAGGTGTTCACTCTGGACGCAGACTTTTAAG 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057762169526060