Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq18 122 9e-23 >seq18 Length=94768 Score = 122 bits (134), Expect = 9e-23 Identities = 304/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 1020 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGA 1079 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 1080 AGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAACCC 1138 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 || ||||| || ||||| || | || || || | | || |||| ||| | | | | Sbjct 1139 GAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACA 1198 Query 16373 TTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT 16432 | | ||| || | |||| ||| || | | | || ||||| || Sbjct 1199 CGAGGGTCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCG 1258 Query 16433 ATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 ||||| | ||| | || || ||| || | || ||||| || ||||| | Sbjct 1259 ATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGC 1318 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 ||||| || ||||| |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 1319 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCC 1378 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACGATACCGT 16610 |||| | ||| || || | || |||| |||||||||||| |||||||| |||| Sbjct 1379 TCCGGCACTTGCACCTCATTGCTGAA--GTTCATCGCCAGGTTCTCGTTCACGATGCCGT 1436 Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 | || ||||| || || || | | |||||| ||||| Sbjct 1437 CGCTGGCAGCGAAGAATGCTAGCACGTGCTTGATGAA 1473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511385236593840