Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18 401 6e-107 seq44 154 2e-32 seq170 143 3e-29 seq1104 127 2e-24 seq58 102 8e-17 >seq18 Length=94768 Score = 401 bits (444), Expect = 6e-107 Identities = 608/858 (71%), Gaps = 8/858 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| |||||||| |||||||||| | ||||| || || | | ||| Sbjct 1641 GAGCCGTTCCTGGTGGAGAACCCGAACCGGTTCGTGCTGTTCCCGATCCAGGAGCACGAC 1582 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| ||||| ||||||||||||||||| | ||||||| |||||||| Sbjct 1581 GTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTG 1522 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | ||| || ||||||| | | ||| |||||||||||||| |||||||||||| Sbjct 1521 GTGCACGACCTGAAGGACTGGGGGAACCTGACGGACAACGAGCGCCACTTCATCAAGCAC 1462 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA-GCGTTT 116814 ||||| || || ||||| ||||||||||||||||| |||||||| |||| ||| | || Sbjct 1461 GTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGG-CGATGAACTT 1403 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | |||||||| ||| | ||||| || |||||||||||||| ||||||||||| || Sbjct 1402 CAGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGA 1343 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||| | |||||||| |||| ||| || |||||||||||| | | | ||| Sbjct 1342 GAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGA 1283 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| | ||| || |||||||||||||| |||||||| | |||||||| || Sbjct 1282 GAAGGATCACTTGCTGCGTGCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTG 1223 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 |||||| ||| | | | | | ||| | ||||| ||| |||| ||||| Sbjct 1222 GGCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCCTACCCGGAGCGTCTGCTGGCGTTCGC 1163 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 ||||| |||||| | ||||| ||||| ||| | |||| || ||||||||||| || Sbjct 1162 CGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCG 1103 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 |||||||||||| || |||| ||| |||||||||||| | |||||||||| |||| Sbjct 1102 CGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCA 1043 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTG---CAGCGACCGAGCGCGGCGCG 117231 ||||| || || | ||| | | | |||||| ||| ||| | | | |||| Sbjct 1042 CACGGACTTCGCGTGCCTCATGTACTCGAAGTTGGTGAACAAGCTGCCG-GAGAGCCGCG 984 Query 117232 CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCT 117291 | || | |||||| ||||| || | || ||||| ||| | | ||| |||| Sbjct 983 TG-CA-CGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCT 926 Query 117292 GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGC 117351 || ||| ||| | || | || | | |||| || |||||||||||||| || Sbjct 925 CCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGC 866 Query 117352 CGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGA 117411 |||| | |||||| | |||| | ||||| ||||||| | |||||| | || Sbjct 865 CGACCGCCTGCTGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGA 806 Query 117412 CTTTATGAACCTCATCTC 117429 || ||| | | ||||| Sbjct 805 CTGGATGGATATGATCTC 788 >seq44 Length=70920 Score = 154 bits (170), Expect = 2e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||| | |||||||| |||||||| | ||||| || | Sbjct 20531 AACATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCT 20472 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | | |||| | ||| | ||||| | ||||| ||||||||||| | || Sbjct 20471 TCGGACTCCATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGA 20413 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 20412 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 20353 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||| | |||||||| | ||| |||| Sbjct 20352 CAACATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCG 20314 >seq170 Length=44224 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || | |||||||| || |||||| | ||||| || | Sbjct 11828 AAGATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCG 11769 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | ||||||| ||||| || |||||||| | || Sbjct 11768 TCGGACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGA 11710 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || || | ||| ||||| ||||| || |||| ||||| || | |||||| Sbjct 11709 CCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTA 11650 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | |||||||| || ||| |||| || | ||||| Sbjct 11649 CAACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 11599 >seq1104 Length=8652 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 5067 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCC 5008 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| || ||||| || | |||||| Sbjct 5007 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 4948 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 4947 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 4888 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 4887 ATCCAGAAGG 4878 >seq58 Length=66770 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 35475 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 35416 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||| ||||||||| ||||||||| || ||| |||| || | Sbjct 35415 ACTCTTTCGGACTACAACATTCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGTCTGCGT 35356 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 35355 GGTGGTGGC 35347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515189819625120