Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq187 149 1e-30 seq61 136 8e-27 seq18 96.9 7e-15 seq1057 95.1 3e-14 >seq187 Length=41780 Score = 149 bits (164), Expect = 1e-30 Identities = 857/1358 (63%), Gaps = 69/1358 (5%) Strand=Plus/Minus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||||| | |||||| || |||||| || | || |||||||| ||| ||||| Sbjct 21456 ATGTACGTGGTCAAGCGCGATGGGCGCTCCGAGGAAGTCAAGTTCGACAAGATCACGGCG 21397 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCC 248538 ||||||| |||||||| || || ||| | || ||| || || || ||| | Sbjct 21396 CGCATCACCAAGCTCTGCTACGGACTGAACCCGGACTATGTGGACGCCGTCAAGATCTCG 21337 Query 248539 CAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCT 248598 ||||| || | ||||||| ||| |||| ||||| ||| | || |||||| | || Sbjct 21336 CAGAAGGTCGTGGCGGGCGTGTACCCCGGCGTAACCACGTCCGAGCTGGACGAGCTGGCC 21277 Query 248599 GCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGGAG 248657 || |||||||| |||||| | | ||| ||||| |||| ||| |||||| | | | Sbjct 21276 GCCGAGACGGCCGCGTACCAGAGCAC-GCAGCACCCAGACTTCTCCAAGCTGGCGGCGCG 21218 Query 248658 GATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGA 248717 |||||||| || | || ||||| | ||||| || ||| || | ||| | | Sbjct 21217 CATCGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTCTTCAGTGACAACATCGAGGT 21158 Query 248718 CCT--------ACATGC-CTATGGGATGG------------------TCGCCGATGACGT 248750 | | ||| || | | || || ||||||| ||||| Sbjct 21157 CTTCCACAAGAACACGCACGAGAAGACGGGCGCCGCGGCGCCGCTCATCGCCGACGACGT 21098 Query 248751 CCACAC---CGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAA 248807 | | ||| || || |||| | || || || || || | ||| | Sbjct 21097 GTATGCGCTCGTGATGGAGCACAAGG---ACGAGCTTAACTCGGCCATCATCCACGACCG 21041 Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 || || |||||||| | ||| | ||||| ||||| ||| || ||| || | Sbjct 21040 GGACTTTGAGTACGACTACTTCGGCTTCAAGACGCTCGAGCGGGGCTACCTCTTCCGCGT 20981 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | || ||| ||||||| || ||||| ||| | ||||| ||||| | || ||||| Sbjct 20980 GAACGGAAAGGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATTCA 20921 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA--TG 248985 |||| | ||||| || | || | ||||| ||| | | | || | Sbjct 20920 CAAGCAAGACATCCAGGCGGCACTGCACACGTATGAGCTCATG--TCACAGATGTTCTTT 20863 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTC 249041 || || || || || |||||||| |||||||| || |||| || |||| || Sbjct 20862 ACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCA----GCTGTCGTC 20807 Query 249042 GTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACA 249101 ||| || || || |||||||| |||||||| | || |||||||| |||||||| || || Sbjct 20806 GTGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCA 20747 Query 249102 GACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161 | ||| || || || | || || || || || | | ||||||||| || Sbjct 20746 GTGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGC 20687 Query 249162 GAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGAT-GGTATCGTACCCCTCCTTC 249220 | | |||||| || || || || ||| | || ||| | ||| | || Sbjct 20686 CACGAACAGCTACATCCGCGGCACGAACGGA-TCATCCAACGGGATCATCCCCATGCTGA 20628 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | ||| | ||| ||| | | | |||||| || || || || || |||| Sbjct 20627 GGGTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGT 20568 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| || |||| ||||||||| || | || ||||||||||| || |||| Sbjct 20567 TCGCCATCTACCTGGAGCCGTGGCACGCTGACGTGTTCGAGTTCCTGGAGCTGCGCAAGA 20508 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || ||||||||||||| | ||||| ||||||||||||| ||||||||| |||| Sbjct 20507 ACCACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATC 20448 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCC 249457 |||||||| || || | || ||||| | |||| ||| | | || || |||| Sbjct 20447 TGTTCATGAAGCGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCC 20388 Query 249458 CGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATC 249515 | | ||| ||| |||| ||| ||||| | || || |||| ||||| Sbjct 20387 CCGGACTCTACGAGTGCTGGGGCGACGAGTTCGA--GACTCTGTACGAGAAGTACGAGAA 20330 Query 249516 CAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGA 249569 | || || ||||||| ||||| || | | || || || | | |||| Sbjct 20329 GGAGGGGCGCGCGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCA---TCCTGGA 20273 Query 249570 GTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGA 249628 | ||||| ||||| || | ||||| | || ||| ||| |||||| |||| |||| Sbjct 20272 CGCGCAGATTGAGACGGGCGTGCCGT-TCATGCTGTACAAGGACGCGGCCAACCGCAAGT 20214 Query 249629 GTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAA 249687 ||||| | | | || || || ||||||||| || | || ||| ||| | || | Sbjct 20213 CGAACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACTTGTGCTGC-GAGATTATGGAG 20155 Query 249688 TACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| |||| || ||| | || || ||||||||||| Sbjct 20154 TACACGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGC 20117 >seq61 Length=65411 Score = 136 bits (150), Expect = 8e-27 Identities = 259/380 (68%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||||||||| ||| |||| ||||| || || ||||||||||| ||||| | || Sbjct 52753 CTGCCTCATTTGCTGTTCTACGGACCTCCAGGCACGGGCAAGACGTCTACCATTGTCGCC 52694 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||| || || || ||| || | | || | ||| | || ||||||||| Sbjct 52693 GTGGGGCGTCAACTCTTCGGCCCGGATTTCCGCAAGAACGGCCGCTTCCTAGAGCTGAAC 52634 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 || || || || || || | | || || || || ||| |||||| ||| || || Sbjct 52633 GCATCCGATGACCGAGGCATTAAGGTGGTGCGAGAGAAGGTCAAGAGCTTCGCCCAGGGT 52574 Query 254178 TCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCG 254237 | || | || |||| |||||||||||| || | | ||||| |||||| Sbjct 52573 GCCATCAGCACTGTCAG---CGGCCTACCGCCTTTCAAGATCATCGTGCTGGATGAGGCG 52517 Query 254238 GACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTT 254297 ||| | ||||||| ||||||||| || || || ||||| | |||||||| ||||| Sbjct 52516 GACTCTATGACGGGCGACGCGCAATCGGCGCTGCGCCGCATGATGGAGAACTACTCCAAG 52457 Query 254298 GTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCT 254357 || ||||| || ||||| | || ||||||||| ||||| | || |||| || Sbjct 52456 GTCACGCGCTTCTGCCTCATCTGTAACTACGTGAGCCGCATCATTGAGCCTGTGGCCTCA 52397 Query 254358 CGGTGCGCCAAGTTTCGATT 254377 || |||||||| ||||| || Sbjct 52396 CGATGCGCCAAATTTCGCTT 52377 >seq18 Length=94768 Score = 96.9 bits (106), Expect = 7e-15 Identities = 397/609 (65%), Gaps = 24/609 (4%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 728 ACACCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 787 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||| |||||||| ||||| ||||| |||||| | |||| ||||| Sbjct 788 GAGATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGT 847 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 || |||| | ||| ||||| |||| |||||||| |||| | | | || Sbjct 848 GAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATG 907 Query 157424 CCGATGAGCGCGACGGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTG 157482 ||||| ||| | ||||| |||| | || | ||| ||| ||||| ||||||| Sbjct 908 CCGATCAGCTCCACGGGGAGCG-AGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTC 966 Query 157483 CTTGAAAATTTCATGAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGA 157541 | || | || || | ||| | ||||||| | ||| | | | ||| |||| Sbjct 967 ACGCACGATCGCGTGCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGTACATGA 1025 Query 157542 -GAACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACG 157598 | ||| |||| |||| ||| | || ||||| | | |||||| ||||| ||| Sbjct 1026 GGCACGCGAAGTCCGT---GTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGC 1082 Query 157599 ACAAACC---CTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCAC 157655 || ||| | ||| | | |||||||| |||||| |||||| |||||| || || Sbjct 1083 TCAGACCAGGCATGA--GGCCG-CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCG 1139 Query 157656 TGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCG-AG--TGAAGCGG 157712 ||| | |||||||| || ||| | | || | ||||| | || ||| | Sbjct 1140 AGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAAC-- 1197 Query 157713 TTTCGGGGTTCA-TCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTC 157771 || || ||| |||||| |||||| | |||||||| || | | || |||||| Sbjct 1198 --ACGAGGGTCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTC 1255 Query 157772 TGGATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGC 157831 | ||| | |||| | ||| || ||| | | |||| ||| ||| || | || ||| Sbjct 1256 TCGATGGCACGCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGC 1315 Query 157832 AGAGAGTAC 157840 || |||||| Sbjct 1316 AGCGAGTAC 1324 >seq1057 Length=9096 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || || |||||||| || || |||||||||||| | | | Sbjct 4113 ATGGCGCAGCGGCTCTGGATGGGCTCGATGATCTTAGTCGAGTTGTTGCAGGCCAGCGCG 4172 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 |||| ||| ||| |||| | | |||||| | || ||||||||||| || | | | Sbjct 4173 AACCTCGTGGTGGCCGAGAAGATCTCCATGGTGCGGCGCAGCGCCTGTTGGGCCGCGGCT 4232 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| || ||||| || | |||||||| Sbjct 4233 GTCATCGAGTCGGCTTCGTCCAGGATCACAATCTT 4267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073703637682816