Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq187 302 4e-77 seq18 203 3e-47 seq170 159 3e-34 seq44 131 1e-25 seq1104 127 2e-24 >seq187 Length=41780 Score = 302 bits (334), Expect = 4e-77 Identities = 991/1525 (65%), Gaps = 31/1525 (2%) Strand=Plus/Plus Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 ||||| || | || |||||||| | ||| ||||| || ||| |||| |||| || || Sbjct 19556 AACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCG 19615 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| |||| |||||||| ||||| || || |||||||| |||| || |||||||| Sbjct 19616 TTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTG 19675 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACA-GATCG--GAC 22642 | | ||||||||| | || ||||||| | ||| ||||||| | || ||| Sbjct 19676 CGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCCCACAAGCCCGAAGAC 19735 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 || || || | ||||||| ||| | || || | || || || || || | | Sbjct 19736 GGGGTGAC---GCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGG 19792 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGC-CTCCAACGCGCCGTA 22761 |||| |||||||| || | ||| | || || | | ||||| | |||| Sbjct 19793 AACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCGAGGTCTCCATAGAAGCGTA 19851 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCGTACGGCA 22820 || || ||||||||||| ||| |||| | ||| ||| ||| ||| ||| ||| || Sbjct 19852 GTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGG-GCTCTCGAACG-CA 19909 Query 22821 TACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 || ||| | | || || ||||| | |||||| ||||| ||||| | ||| |||| Sbjct 19910 TAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGG 19969 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 || || ||| ||||| || || || | || || || ||||| Sbjct 19970 CGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTC 20029 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT 22999 ||||| | |||||| | || || | | ||| | | || || || Sbjct 20030 AAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAACACTCC--AT 20087 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | || |||||||| || ||| | || || || ||||| || |||||||| || Sbjct 20088 CCTCCA-CAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGC 20146 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 ||||||||||| | ||| ||| || | ||||| | |||||||| | || | Sbjct 20147 GACGTGTACTCCATAATCTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGC 20206 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 ||||| || || ||| || |||||||| |||||| ||||| ||||||||| | | Sbjct 20207 TGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATC 20266 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACGTACCTGCC 23238 |||| || | ||| || ||||| ||| || | || | | || || | || Sbjct 20267 TGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCC 20326 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 | |||| |||||||| | ||||| | || || ||| | || | || ||| || || Sbjct 20327 TCCTTC-TCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCC 20385 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 ||| | | | || || | || |||||| | || ||| || || |||| || Sbjct 20386 GGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAA 20445 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 ||||| || | ||| ||||||||||| || ||||| ||||| | ||| |||||| Sbjct 20446 CAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTG 20505 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 |||||| || |||| || || |||||||| || ||||||||||| ||||| | ||| Sbjct 20506 GTTCTTGCGCAGCTCCAGGAACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGC 20565 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 |||| ||| | ||| || ||||| || || || |||||||||| ||| | || Sbjct 20566 GAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGAC 20625 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTT 23598 || ||||| || | || |||||||| | ||| | || ||| | | | || | Sbjct 20626 CCTCAGCATGGGGATGATCCCGTTGGATGATCCG--TTCG--TGCCGCGGATGTAGCTGT 20681 Query 23599 T----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | || || | |||||| | | || || |||||| || | || || || || Sbjct 20682 TCGTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACG 20741 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714 |||| || || || |||||||| |||||||| || ||| || | | || | || || Sbjct 20742 CGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGA 20801 Query 23715 AACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCG 23774 ||||||| |||| |||| ||||| |||| || || || || | ||||||| Sbjct 20802 AACACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCG 20861 Query 23775 TAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGT 23834 ||||| | | ||||| || | ||||||| | || || | ||||| | || Sbjct 20862 TAAAGAACATCTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGT 20921 Query 23835 GTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGT 23891 | ||||| | || |||||||| ||||| | || || | || ||||| | |||| Sbjct 20922 GAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTT---TCCGT 20978 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951 | | ||| || || || | | ||| || || || || ||||| || | ||||| Sbjct 20979 TCACGCGGAAGAGGTAGCCCCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGT 21038 Query 23952 CACGATCGTGCACTATGGCCGAATT 23976 | || ||||| | |||||||| || Sbjct 21039 CCCGGTCGTGGATGATGGCCGAGTT 21063 >seq18 Length=94768 Score = 203 bits (224), Expect = 3e-47 Identities = 561/842 (67%), Gaps = 30/842 (4%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 1584 GACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGAC 1525 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||| | || |||| || |||| ||| | || ||| | | || || || Sbjct 1524 CTGGTGCACGACCTGAAGGACTGGGGGAACCTGACGGACAACGAGCGCCACTTCATCAAG 1465 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || ||||| || ||| || || || |||||||| ||| ||| || Sbjct 1464 CACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGG-CGAT-GA 1407 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| ||| || ||||||||| ||||||| | ||||| ||||| || || | |||| Sbjct 1406 ACTTCAGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCA 1347 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || |||| ||||| || ||||| |||||| | |||||| || Sbjct 1346 TCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCG 1287 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCA 57923 ||||| | || | || ||||| || || || ||| | | |||||||| Sbjct 1286 TGGAGAAGGATCACTTGCTGCGTGCCATCGAGACGATCCCGTGCG-TGGAGAAGAAGGCC 1228 Query 57924 GAGTGGTCAATCAAATGGATAAAAA---GCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 ||| | |||| ||| | | | || || | | | ||| | || | Sbjct 1227 CGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCC---TACCCGGAGCGTCTGCTG 1171 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGAT 58039 |||||||||||||| || || || ||||| ||||| ||| ||| | || || ||| | Sbjct 1170 GCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGC-TCCATCTTCTGGCT 1112 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| |||||||| ||||| || |||| || |||||| | || || ||||| Sbjct 1111 CAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGA 1052 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG 58159 ||| | || || || || |||||||| |||||||| | | || || || | || Sbjct 1051 GGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGAAGTTGGTGAACAA---GCTGCC 995 Query 58160 GGATCGCATCTTGGAC---ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 ||| || | || || || | || || || | ||| || | ||||| || | Sbjct 994 GGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAG 935 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| | || || |||| || |||| |||||| || | |||| ||||||| || Sbjct 934 CGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGA 875 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTC----AT-TACAACACG 58331 ||| || |||||| | | |||| | ||| | ||| | || || || |||||| | Sbjct 874 GTTCGTGGCCGACCGCC---TGCT-GTACTCACTGG-GTGCATCCAAGATCTACAACGTG 820 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAA 58391 || || ||||| || | ||| || |||||||||| |||||||||| ||||| ||||| Sbjct 819 AAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAG 760 Query 58392 AA 58393 || Sbjct 759 AA 758 >seq170 Length=44224 Score = 159 bits (176), Expect = 3e-34 Identities = 179/238 (75%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||||||| ||||| || ||||| |||||| |||| ||||| ||||||||| | ||||| Sbjct 11833 GAATCAAG-ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTG 11775 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 || ||||| ||| |||| | || || |||| ||| ||||||||||||| | ||| Sbjct 11774 GAGCCGTCGGACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCG 11715 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 || ||||||||||| || || ||||||||||| ||| | |||||| || ||||| Sbjct 11714 CCTGACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGC 11655 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || || || || || ||||| || | ||| | ||||||| Sbjct 11654 GACTACAACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGTA 11597 >seq44 Length=70920 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| |||| ||||| || ||||| | ||||| || || Sbjct 20531 AACATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCT 20472 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| |||||||| ||| | ||||||||| Sbjct 20471 TCGGACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGAC 20412 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| ||| | || ||||||| || Sbjct 20411 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 20352 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || |||| || Sbjct 20351 AACATCCAGAAGGAGTCTACGCTGCACTTGGTGCT 20317 >seq1104 Length=8652 Score = 127 bits (140), Expect = 2e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| | ||||| || || Sbjct 5071 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCC 5012 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||||| | || | ||||| |||| ||| ||||||||||||| | ||||| || Sbjct 5011 GTCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGA 4952 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| | || ||| Sbjct 4951 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 4912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445740980171040