Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq230 125 5e-24 >seq230 Length=37567 Score = 125 bits (138), Expect = 5e-24 Identities = 360/548 (66%), Gaps = 13/548 (2%) Strand=Plus/Minus Query 25425 AGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCC 25484 || || || ||||| | ||| || || || ||||| || | | ||| | ||| || || Sbjct 16176 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 16117 Query 25485 GGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTA 25544 |||| | ||| | || | |||| | ||| || || |||||| || |||||| Sbjct 16116 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 16057 Query 25545 AAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC 25604 || || || || | |||||||| || || | |||||| | ||||||||| | ||| | Sbjct 16056 AACGGCACACCAAGACCCATGTCGGCC-GAGCGCTGGTACATCTGACACGACAACTCCCC 15998 Query 25605 GTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTC 25664 ||| |||||| || || || | ||| |||||| || || || || | || || Sbjct 15997 GTCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATC 15938 Query 25665 TTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT-GTCC----CTGATA 25719 ||||||||| || ||| | ||| | | ||| ||||| || | || | Sbjct 15937 AGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTG 15878 Query 25720 AGATCCGCGGTGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTC 25778 | ||| | | ||| |||| ||||| ||| || | |||||| || |||||| Sbjct 15877 A-ATCACC-----TCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGCGTGCATGTC 15824 Query 25779 CGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATC 25838 ||||||| || || |||| | ||||||||| ||||| || ||||| ||||| || | Sbjct 15823 CGTGTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCAC 15764 Query 25839 TTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGAT 25898 ||| | || || || | | |||||| | |||| ||| ||||| |||||||||| Sbjct 15763 TTCGCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGAT 15704 Query 25899 CTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 25958 | | |||||| ||| | | | | ||| || || | |||||||||||| Sbjct 15703 GTGAATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAG 15644 Query 25959 CTCCGCCG 25966 |||| ||| Sbjct 15643 CTCCTCCG 15636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340118688562026