Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq911 122 6e-23 seq2060 98.7 7e-16 seq44 84.2 1e-11 >seq911 Length=11140 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 1961 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 1902 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 1901 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 1867 >seq2060 Length=3240 Score = 98.7 bits (108), Expect = 7e-16 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 19957 AAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTT 20016 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3240 AAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCACCAATATTT 3181 Query 20017 AGCCTTA 20023 ||| ||| Sbjct 3180 AGCTTTA 3174 >seq44 Length=70920 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| |||||| || || || |||||| || || ||||| || || || | Sbjct 20313 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 20372 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || | || || ||||| || || || || || || |||| |||| ||| || || Sbjct 20373 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 20432 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||||| |||||||| || | || | || | || || || | || || Sbjct 20433 GTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGAT 20492 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || |||||||| || |||||||| ||||||||||| Sbjct 20493 GGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 20531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334928577145022